Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | E1H29_RS07000 | Genome accession | NZ_CP037839 |
| Coordinates | 1479200..1480246 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Cd6 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1453143..1518021 | 1479200..1480246 | within | 0 |
Gene organization within MGE regions
Location: 1453143..1518021
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E1H29_RS06885 (E1H29_07105) | rimP | 1455559..1456020 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| E1H29_RS06890 (E1H29_07110) | nusA | 1456050..1457204 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| E1H29_RS06895 (E1H29_07115) | rnpM | 1457211..1457492 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| E1H29_RS06900 (E1H29_07120) | - | 1457482..1457793 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| E1H29_RS06905 (E1H29_07125) | infB | 1457815..1459755 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| E1H29_RS06910 (E1H29_07130) | rbfA | 1459798..1460178 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| E1H29_RS06915 (E1H29_07135) | - | 1460159..1460836 (+) | 678 | Protein_1273 | DHH family phosphoesterase | - |
| E1H29_RS06920 (E1H29_07145) | tnpB | 1461483..1462601 (+) | 1119 | WP_216226400.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| E1H29_RS06925 (E1H29_07150) | - | 1462719..1463024 (+) | 306 | Protein_1275 | DHH family phosphoesterase | - |
| E1H29_RS06930 (E1H29_07155) | truB | 1463037..1463942 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| E1H29_RS06935 (E1H29_07160) | - | 1464073..1465002 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| E1H29_RS06940 (E1H29_07170) | rpsO | 1465106..1465363 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| E1H29_RS06945 (E1H29_07175) | - | 1465603..1466448 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| E1H29_RS06950 (E1H29_07180) | pnp | 1466573..1468684 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| E1H29_RS06955 (E1H29_07185) | - | 1468952..1469695 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| E1H29_RS06960 (E1H29_07190) | - | 1469853..1471100 (+) | 1248 | WP_003438321.1 | M16 family metallopeptidase | - |
| E1H29_RS06965 (E1H29_07195) | - | 1471135..1471380 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| E1H29_RS06970 (E1H29_07200) | dapG | 1471390..1472613 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| E1H29_RS06975 (E1H29_07205) | - | 1472726..1473460 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| E1H29_RS06980 (E1H29_07210) | - | 1473583..1475994 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| E1H29_RS06985 (E1H29_07215) | mnmH | 1475997..1477055 (+) | 1059 | WP_011861175.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| E1H29_RS06990 (E1H29_07220) | rimO | 1477049..1478383 (+) | 1335 | WP_011861176.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| E1H29_RS06995 (E1H29_07225) | pgsA | 1478370..1478912 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| E1H29_RS07000 (E1H29_07230) | recA | 1479200..1480246 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| E1H29_RS07005 (E1H29_07235) | rny | 1480422..1481963 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| E1H29_RS07010 (E1H29_07240) | - | 1482598..1484379 (+) | 1782 | WP_011861177.1 | UvrD-helicase domain-containing protein | - |
| E1H29_RS07015 (E1H29_07245) | lepB | 1484461..1484991 (-) | 531 | WP_011861178.1 | signal peptidase I | - |
| E1H29_RS07020 (E1H29_07250) | - | 1485031..1485855 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| E1H29_RS07025 (E1H29_07255) | - | 1486112..1487020 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| E1H29_RS07030 (E1H29_07260) | purB | 1487164..1488609 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| E1H29_RS07035 (E1H29_07265) | - | 1488920..1489372 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| E1H29_RS07040 (E1H29_07270) | - | 1489784..1491361 (+) | 1578 | WP_011861179.1 | PTS transporter subunit EIIC | - |
| E1H29_RS07045 (E1H29_07275) | - | 1491509..1492261 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| E1H29_RS07050 (E1H29_07280) | - | 1492394..1493740 (+) | 1347 | WP_009892979.1 | 6-phospho-alpha-glucosidase | - |
| E1H29_RS07055 (E1H29_07285) | - | 1493852..1495048 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| E1H29_RS07060 (E1H29_07290) | galT | 1495433..1496383 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| E1H29_RS07065 (E1H29_07295) | - | 1496543..1497295 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| E1H29_RS07070 (E1H29_07300) | - | 1497387..1498163 (-) | 777 | WP_016729594.1 | 3'-5' exonuclease | - |
| E1H29_RS07075 (E1H29_07305) | - | 1498478..1500376 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| E1H29_RS07080 (E1H29_07310) | - | 1500504..1501625 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| E1H29_RS07085 (E1H29_07315) | - | 1501824..1502156 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| E1H29_RS07090 (E1H29_07320) | - | 1502143..1503225 (+) | 1083 | WP_011861182.1 | DUF1700 domain-containing protein | - |
| E1H29_RS07095 (E1H29_07325) | - | 1503218..1504288 (+) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| E1H29_RS07100 (E1H29_07330) | - | 1504390..1504926 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| E1H29_RS07105 (E1H29_07335) | - | 1505042..1505749 (+) | 708 | WP_009896245.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| E1H29_RS07110 (E1H29_07340) | - | 1505751..1506467 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| E1H29_RS07115 (E1H29_07345) | - | 1506469..1507227 (+) | 759 | WP_011861184.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| E1H29_RS07120 (E1H29_07350) | - | 1507362..1508750 (+) | 1389 | WP_011861185.1 | two-component system sensor histidine kinase | - |
| E1H29_RS07125 (E1H29_07355) | - | 1508826..1509647 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| E1H29_RS07130 (E1H29_07360) | - | 1509898..1511052 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| E1H29_RS07135 (E1H29_07365) | - | 1511235..1511435 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| E1H29_RS07140 (E1H29_07370) | - | 1511856..1512284 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| E1H29_RS07145 (E1H29_07375) | - | 1512427..1513182 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| E1H29_RS07150 (E1H29_07385) | - | 1513883..1514389 (-) | 507 | WP_011861186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| E1H29_RS07155 (E1H29_07390) | - | 1514471..1514791 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| E1H29_RS07160 (E1H29_07395) | - | 1514960..1515157 (+) | 198 | WP_011861187.1 | helix-turn-helix transcriptional regulator | - |
| E1H29_RS07165 (E1H29_07400) | - | 1515262..1515702 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| E1H29_RS07170 (E1H29_07405) | - | 1515951..1516394 (+) | 444 | WP_009896258.1 | phage tail terminator family protein | - |
| E1H29_RS07175 (E1H29_07410) | - | 1516399..1517463 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| E1H29_RS07180 (E1H29_07415) | - | 1517477..1517905 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=350164 E1H29_RS07000 WP_003428218.1 1479200..1480246(+) (recA) [Clostridioides difficile strain Cd6]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=350164 E1H29_RS07000 WP_003428218.1 1479200..1480246(+) (recA) [Clostridioides difficile strain Cd6]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.