Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GKC13_RS01865 Genome accession   NZ_CP046134
Coordinates   347946..348689 (+) Length   247 a.a.
NCBI ID   WP_084829069.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 342946..353689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS01845 (GKC13_01845) dinB 343883..344986 (+) 1104 WP_179971030.1 DNA polymerase IV -
  GKC13_RS01850 (GKC13_01850) - 345272..345505 (+) 234 WP_065972545.1 hypothetical protein -
  GKC13_RS01855 (GKC13_01855) - 345974..346804 (+) 831 WP_041828322.1 transporter substrate-binding domain-containing protein -
  GKC13_RS01860 (GKC13_01860) - 347200..347946 (+) 747 WP_179970821.1 amino acid ABC transporter permease -
  GKC13_RS01865 (GKC13_01865) amiE 347946..348689 (+) 744 WP_084829069.1 amino acid ABC transporter ATP-binding protein Regulator
  GKC13_RS01870 (GKC13_01870) - 348904..349128 (+) 225 WP_087010135.1 DUF4059 family protein -
  GKC13_RS01875 (GKC13_01875) trxB 349161..350114 (+) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  GKC13_RS01880 (GKC13_01880) rsmD 350205..350804 (+) 600 Protein_362 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GKC13_RS01885 (GKC13_01885) coaD 350838..351335 (+) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  GKC13_RS01890 (GKC13_01890) sepM 351313..352389 (+) 1077 WP_022096499.1 SepM family pheromone-processing serine protease Regulator
  GKC13_RS01895 (GKC13_01895) - 352474..353418 (+) 945 WP_011226463.1 TIGR01212 family radical SAM protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27661.80 Da        Isoelectric Point: 5.7786

>NTDB_id=350147 GKC13_RS01865 WP_084829069.1 347946..348689(+) (amiE) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFGTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=350147 GKC13_RS01865 WP_084829069.1 347946..348689(+) (amiE) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGGAACAATTACCAAGGAGCAAATCCTTACCCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364

Multiple sequence alignment