Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | E1H32_RS06830 | Genome accession | NZ_CP037830 |
| Coordinates | 1444806..1445852 (+) | Length | 348 a.a. |
| NCBI ID | WP_021364420.1 | Uniprot ID | A0A9X8RFQ1 |
| Organism | Clostridioides difficile strain Cd9 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1418758..1483604 | 1444806..1445852 | within | 0 |
Gene organization within MGE regions
Location: 1418758..1483604
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E1H32_RS06715 (E1H32_06845) | rimP | 1421174..1421635 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| E1H32_RS06720 (E1H32_06850) | nusA | 1421665..1422819 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| E1H32_RS06725 (E1H32_06855) | rnpM | 1422826..1423107 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| E1H32_RS06730 (E1H32_06860) | - | 1423097..1423408 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| E1H32_RS06735 (E1H32_06865) | infB | 1423430..1425370 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| E1H32_RS06740 (E1H32_06870) | rbfA | 1425413..1425793 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| E1H32_RS06745 (E1H32_06875) | - | 1425774..1426451 (+) | 678 | Protein_1236 | DHH family phosphoesterase | - |
| E1H32_RS06750 (E1H32_06885) | tnpB | 1427091..1428209 (+) | 1119 | WP_216115655.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| E1H32_RS06755 (E1H32_06890) | - | 1428327..1428632 (+) | 306 | Protein_1238 | DHH family phosphoesterase | - |
| E1H32_RS06760 (E1H32_06895) | truB | 1428645..1429550 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| E1H32_RS06765 (E1H32_06900) | - | 1429681..1430610 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| E1H32_RS06770 (E1H32_06910) | rpsO | 1430714..1430971 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| E1H32_RS06775 (E1H32_06915) | - | 1431211..1432056 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| E1H32_RS06780 (E1H32_06920) | pnp | 1432181..1434292 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| E1H32_RS06785 (E1H32_06925) | - | 1434558..1435301 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| E1H32_RS06790 (E1H32_06930) | - | 1435459..1436706 (+) | 1248 | WP_021424790.1 | M16 family metallopeptidase | - |
| E1H32_RS06795 (E1H32_06935) | - | 1436741..1436986 (+) | 246 | WP_021364423.1 | YlmC/YmxH family sporulation protein | - |
| E1H32_RS06800 (E1H32_06940) | dapG | 1436996..1438219 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| E1H32_RS06805 (E1H32_06945) | - | 1438332..1439066 (+) | 735 | WP_021364422.1 | ClpP family protease | - |
| E1H32_RS06810 (E1H32_06950) | - | 1439189..1441600 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| E1H32_RS06815 (E1H32_06955) | mnmH | 1441603..1442661 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| E1H32_RS06820 (E1H32_06960) | rimO | 1442655..1443989 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| E1H32_RS06825 (E1H32_06965) | pgsA | 1443976..1444518 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| E1H32_RS06830 (E1H32_06970) | recA | 1444806..1445852 (+) | 1047 | WP_021364420.1 | recombinase RecA | Machinery gene |
| E1H32_RS06835 (E1H32_06975) | rny | 1446028..1447569 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| E1H32_RS06840 (E1H32_06980) | - | 1448204..1449985 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| E1H32_RS06845 (E1H32_06985) | lepB | 1450067..1450597 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| E1H32_RS06850 (E1H32_06990) | - | 1450637..1451461 (-) | 825 | WP_074105863.1 | undecaprenyl-diphosphate phosphatase | - |
| E1H32_RS06855 (E1H32_06995) | - | 1451718..1452626 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| E1H32_RS06860 (E1H32_07000) | purB | 1452770..1454215 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| E1H32_RS06865 (E1H32_07005) | - | 1454526..1454978 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| E1H32_RS06870 (E1H32_07010) | - | 1455390..1456967 (+) | 1578 | WP_009902415.1 | PTS transporter subunit EIIC | - |
| E1H32_RS06875 (E1H32_07015) | - | 1457115..1457867 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| E1H32_RS06880 (E1H32_07020) | - | 1458000..1459346 (+) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| E1H32_RS06885 (E1H32_07025) | - | 1459458..1460654 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| E1H32_RS06890 (E1H32_07030) | galT | 1461039..1461989 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| E1H32_RS06895 (E1H32_07035) | - | 1462150..1462902 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| E1H32_RS06900 (E1H32_07040) | - | 1462994..1463770 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| E1H32_RS06905 (E1H32_07045) | - | 1464085..1465983 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| E1H32_RS06910 (E1H32_07050) | - | 1466111..1467232 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| E1H32_RS06915 (E1H32_07055) | - | 1467431..1467763 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| E1H32_RS06920 (E1H32_07060) | - | 1467750..1468808 (+) | 1059 | WP_021367719.1 | DUF1700 domain-containing protein | - |
| E1H32_RS06925 (E1H32_07065) | - | 1468801..1469871 (+) | 1071 | WP_009896243.1 | DUF4097 family beta strand repeat-containing protein | - |
| E1H32_RS06930 (E1H32_07070) | - | 1469973..1470509 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| E1H32_RS06935 (E1H32_07075) | - | 1470625..1471332 (+) | 708 | WP_021363440.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| E1H32_RS06940 (E1H32_07080) | - | 1471334..1472050 (+) | 717 | WP_016729591.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| E1H32_RS06945 (E1H32_07085) | - | 1472052..1472810 (+) | 759 | WP_021421479.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| E1H32_RS06950 (E1H32_07090) | - | 1472945..1474333 (+) | 1389 | WP_011861185.1 | two-component system sensor histidine kinase | - |
| E1H32_RS06955 (E1H32_07095) | - | 1474409..1475230 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| E1H32_RS06960 (E1H32_07100) | - | 1475481..1476635 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| E1H32_RS06965 (E1H32_07105) | - | 1476818..1477018 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| E1H32_RS06970 (E1H32_07110) | - | 1477439..1477867 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| E1H32_RS06975 (E1H32_07115) | - | 1478010..1478765 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| E1H32_RS06980 (E1H32_07125) | - | 1479466..1479972 (-) | 507 | WP_011861186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| E1H32_RS06985 (E1H32_07130) | - | 1480054..1480374 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| E1H32_RS06990 (E1H32_07135) | - | 1480543..1480740 (+) | 198 | WP_011861187.1 | helix-turn-helix transcriptional regulator | - |
| E1H32_RS06995 (E1H32_07140) | - | 1480845..1481285 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| E1H32_RS07000 (E1H32_07145) | - | 1481534..1481977 (+) | 444 | WP_009896258.1 | phage tail terminator family protein | - |
| E1H32_RS07005 (E1H32_07150) | - | 1481982..1483046 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| E1H32_RS07010 (E1H32_07155) | - | 1483060..1483488 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37389.74 Da Isoelectric Point: 4.8236
>NTDB_id=350113 E1H32_RS06830 WP_021364420.1 1444806..1445852(+) (recA) [Clostridioides difficile strain Cd9]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=350113 E1H32_RS06830 WP_021364420.1 1444806..1445852(+) (recA) [Clostridioides difficile strain Cd9]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.