Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | E1H34_RS06680 | Genome accession | NZ_CP037822 |
| Coordinates | 1430572..1431618 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Cd11 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1404553..1469370 | 1430572..1431618 | within | 0 |
Gene organization within MGE regions
Location: 1404553..1469370
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E1H34_RS06565 (E1H34_06715) | rimP | 1406969..1407430 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| E1H34_RS06570 (E1H34_06720) | nusA | 1407460..1408614 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| E1H34_RS06575 (E1H34_06725) | rnpM | 1408621..1408902 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| E1H34_RS06580 (E1H34_06730) | - | 1408892..1409203 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| E1H34_RS06585 (E1H34_06735) | infB | 1409225..1411165 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| E1H34_RS06590 (E1H34_06740) | rbfA | 1411208..1411588 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| E1H34_RS06595 (E1H34_06745) | - | 1411569..1412246 (+) | 678 | Protein_1204 | DHH family phosphoesterase | - |
| E1H34_RS06600 (E1H34_06755) | tnpB | 1412857..1413975 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| E1H34_RS06605 (E1H34_06760) | - | 1414093..1414398 (+) | 306 | Protein_1206 | DHH family phosphoesterase | - |
| E1H34_RS06610 (E1H34_06765) | truB | 1414411..1415316 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| E1H34_RS06615 (E1H34_06770) | - | 1415447..1416376 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| E1H34_RS06620 (E1H34_06780) | rpsO | 1416480..1416737 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| E1H34_RS06625 (E1H34_06785) | - | 1416977..1417822 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| E1H34_RS06630 (E1H34_06790) | pnp | 1417947..1420058 (+) | 2112 | WP_021370265.1 | polyribonucleotide nucleotidyltransferase | - |
| E1H34_RS06635 (E1H34_06795) | - | 1420324..1421067 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| E1H34_RS06640 (E1H34_06800) | - | 1421225..1422472 (+) | 1248 | WP_003438321.1 | M16 family metallopeptidase | - |
| E1H34_RS06645 (E1H34_06805) | - | 1422507..1422752 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| E1H34_RS06650 (E1H34_06810) | dapG | 1422762..1423985 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| E1H34_RS06655 (E1H34_06815) | - | 1424098..1424832 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| E1H34_RS06660 (E1H34_06820) | - | 1424955..1427366 (+) | 2412 | WP_009896226.1 | FtsK/SpoIIIE family DNA translocase | - |
| E1H34_RS06665 (E1H34_06825) | mnmH | 1427369..1428427 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| E1H34_RS06670 (E1H34_06830) | rimO | 1428421..1429755 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| E1H34_RS06675 (E1H34_06835) | pgsA | 1429742..1430284 (+) | 543 | WP_021370268.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| E1H34_RS06680 (E1H34_06840) | recA | 1430572..1431618 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| E1H34_RS06685 (E1H34_06845) | rny | 1431794..1433335 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| E1H34_RS06690 (E1H34_06850) | - | 1433970..1435751 (+) | 1782 | WP_021371984.1 | UvrD-helicase domain-containing protein | - |
| E1H34_RS06695 (E1H34_06855) | lepB | 1435833..1436363 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| E1H34_RS06700 (E1H34_06860) | - | 1436403..1437227 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| E1H34_RS06705 (E1H34_06865) | - | 1437484..1438392 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| E1H34_RS06710 (E1H34_06870) | purB | 1438536..1439981 (+) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| E1H34_RS06715 (E1H34_06875) | - | 1440292..1440744 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| E1H34_RS06720 (E1H34_06880) | - | 1441156..1442733 (+) | 1578 | WP_009902415.1 | PTS transporter subunit EIIC | - |
| E1H34_RS06725 (E1H34_06885) | - | 1442881..1443633 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| E1H34_RS06730 (E1H34_06890) | - | 1443766..1445112 (+) | 1347 | WP_330373685.1 | 6-phospho-alpha-glucosidase | - |
| E1H34_RS06735 (E1H34_06895) | - | 1445224..1446420 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| E1H34_RS06740 (E1H34_06900) | galT | 1446805..1447755 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| E1H34_RS06745 (E1H34_06905) | - | 1447916..1448668 (+) | 753 | WP_216143517.1 | exodeoxyribonuclease III | - |
| E1H34_RS06750 (E1H34_06910) | - | 1448760..1449536 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| E1H34_RS06755 (E1H34_06915) | - | 1449851..1451749 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| E1H34_RS06760 (E1H34_06920) | - | 1451877..1452998 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| E1H34_RS06765 (E1H34_06925) | - | 1453197..1453529 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| E1H34_RS06770 (E1H34_06930) | - | 1453516..1454574 (+) | 1059 | WP_021367719.1 | DUF1700 domain-containing protein | - |
| E1H34_RS06775 (E1H34_06935) | - | 1454567..1455637 (+) | 1071 | WP_021370271.1 | DUF4097 family beta strand repeat-containing protein | - |
| E1H34_RS06780 (E1H34_06940) | - | 1455739..1456275 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| E1H34_RS06785 (E1H34_06945) | - | 1456391..1457098 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| E1H34_RS06790 (E1H34_06950) | - | 1457100..1457816 (+) | 717 | WP_021370272.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| E1H34_RS06795 (E1H34_06955) | - | 1457818..1458576 (+) | 759 | WP_009902423.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| E1H34_RS06800 (E1H34_06960) | - | 1458711..1460099 (+) | 1389 | WP_021370273.1 | two-component system sensor histidine kinase | - |
| E1H34_RS06805 (E1H34_06965) | - | 1460175..1460996 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| E1H34_RS06810 (E1H34_06970) | - | 1461247..1462401 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| E1H34_RS06815 (E1H34_06975) | - | 1462584..1462784 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| E1H34_RS06820 (E1H34_06980) | - | 1463205..1463633 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| E1H34_RS06825 (E1H34_06985) | - | 1463776..1464531 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| E1H34_RS06830 (E1H34_06995) | - | 1465232..1465738 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| E1H34_RS06835 (E1H34_07000) | - | 1465820..1466140 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| E1H34_RS06840 (E1H34_07005) | - | 1466309..1466506 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| E1H34_RS06845 (E1H34_07010) | - | 1466611..1467051 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| E1H34_RS06850 (E1H34_07015) | - | 1467300..1467743 (+) | 444 | WP_009896258.1 | phage tail terminator family protein | - |
| E1H34_RS06855 (E1H34_07020) | - | 1467748..1468812 (+) | 1065 | WP_021370274.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| E1H34_RS06860 (E1H34_07025) | - | 1468826..1469254 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=350079 E1H34_RS06680 WP_003428218.1 1430572..1431618(+) (recA) [Clostridioides difficile strain Cd11]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=350079 E1H34_RS06680 WP_003428218.1 1430572..1431618(+) (recA) [Clostridioides difficile strain Cd11]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.