Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EZV72_RS14305 Genome accession   NZ_CP036536
Coordinates   3238373..3239407 (-) Length   344 a.a.
NCBI ID   WP_137167865.1    Uniprot ID   -
Organism   Salinimonas lutimaris strain DPSR-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3233373..3244407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZV72_RS14280 ccmB 3233670..3234338 (-) 669 WP_269747624.1 heme exporter protein CcmB -
  EZV72_RS14285 ccmA 3234335..3234955 (-) 621 WP_137167861.1 cytochrome c biogenesis heme-transporting ATPase CcmA -
  EZV72_RS14290 - 3235119..3237197 (+) 2079 WP_137167862.1 flagellar hook-length control protein FliK -
  EZV72_RS14295 - 3237194..3237517 (+) 324 WP_137167863.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  EZV72_RS14300 - 3237546..3238229 (+) 684 WP_137167864.1 hypothetical protein -
  EZV72_RS14305 recA 3238373..3239407 (-) 1035 WP_137167865.1 recombinase RecA Machinery gene
  EZV72_RS14310 - 3239564..3240094 (-) 531 WP_137168772.1 CinA family protein -
  EZV72_RS14315 mutS 3240212..3242761 (+) 2550 WP_137168773.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37252.68 Da        Isoelectric Point: 4.9695

>NTDB_id=349519 EZV72_RS14305 WP_137167865.1 3238373..3239407(-) (recA) [Salinimonas lutimaris strain DPSR-4]
MDDNKSKALTAAVGQIEKQFGKGSIMRLGDNQAMDIESISTGSLSIDIALGIGGLPCGRVVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAQKLGVNIDDLLVSQPDTGEQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKRTNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVAPPFRQAEFMIRYGEGISKEAELIDLGVKQKLVDKAGAWYSYNGDRIGQGKANVINFLKDNPEIAQEIEV
KIREELLSKTPRVEPTEGESEETL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=349519 EZV72_RS14305 WP_137167865.1 3238373..3239407(-) (recA) [Salinimonas lutimaris strain DPSR-4]
GTGGACGACAATAAATCAAAAGCTCTTACGGCCGCTGTCGGCCAGATAGAAAAGCAATTTGGTAAAGGCTCAATCATGCG
TCTTGGTGACAACCAGGCGATGGATATTGAGTCTATCTCTACCGGCTCGCTAAGTATCGACATTGCGCTGGGTATAGGCG
GTTTGCCATGTGGCCGGGTGGTAGAAATCTACGGTCCTGAGTCCTCGGGTAAAACCACGCTGACCTTACAGGTTATCGCT
GAAGCCCAGAAAAAAGGTAAAACCTGTGCATTCGTGGATGCCGAGCATGCACTGGATCCAATTTATGCCCAAAAACTGGG
TGTGAACATTGACGATCTGCTGGTATCTCAGCCAGACACGGGTGAGCAGGCACTGGAAATCTGCGACATGCTGGTGCGTT
CAGGCGCGGTAGATGTTGTGATTGTGGACTCGGTAGCAGCACTGACGCCTAAAGCGGAGATCGAAGGCGAAATGGGTGAC
TCTCACGTTGGTTTGCAGGCACGTCTGATGTCTCAGGCACTGCGTAAACTGACCGGCAATATCAAGCGCACAAACACCCT
GTGTATCTTCATTAACCAGATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCTGAAACTACAACCGGTGGTAATGCGC
TGAAATTCTACTCATCAGTACGTCTGGATATCCGTCGTATCGGTGCGGTAAAAGAAGGTGATGAGGTTGTTGGTAACGAA
ACCCGGGTCAAAGTGGTGAAAAACAAAGTAGCGCCGCCATTCAGACAAGCTGAATTTATGATTCGCTATGGCGAAGGAAT
CAGTAAAGAAGCTGAGCTGATTGATCTGGGTGTAAAACAGAAACTGGTGGATAAAGCCGGTGCCTGGTACAGCTATAACG
GTGACAGAATTGGTCAGGGTAAAGCCAATGTCATTAACTTCTTAAAAGATAATCCTGAGATTGCTCAAGAGATTGAAGTT
AAGATTCGCGAAGAACTGTTGTCTAAAACACCACGTGTTGAGCCAACCGAAGGCGAATCAGAAGAAACATTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.679

97.674

0.759
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.659

95.349

0.75
  recA Vibrio cholerae strain A1552

78.659

95.349

0.75
  recA Acinetobacter baylyi ADP1

73.684

99.419

0.733
  recA Acinetobacter baumannii D1279779

74.695

95.349

0.712
  recA Glaesserella parasuis strain SC1401

72.81

96.221

0.701
  recA Neisseria gonorrhoeae MS11

74.383

94.186

0.701
  recA Neisseria gonorrhoeae MS11

74.383

94.186

0.701
  recA Neisseria gonorrhoeae strain FA1090

74.383

94.186

0.701
  recA Ralstonia pseudosolanacearum GMI1000

75.563

90.407

0.683
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.972

95.058

0.637
  recA Bacillus subtilis subsp. subtilis str. 168

66.46

93.605

0.622
  recA Helicobacter pylori 26695

64.526

95.058

0.613
  recA Helicobacter pylori strain NCTC11637

64.526

95.058

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

97.093

0.608
  recA Streptococcus mutans UA159

61.231

94.477

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

93.314

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.069

92.733

0.576
  recA Streptococcus mitis NCTC 12261

61.3

93.895

0.576
  recA Streptococcus mitis SK321

60.991

93.895

0.573
  recA Streptococcus pneumoniae Rx1

60.429

94.767

0.573
  recA Streptococcus pneumoniae D39

60.429

94.767

0.573
  recA Streptococcus pneumoniae R6

60.429

94.767

0.573
  recA Streptococcus pneumoniae TIGR4

60.429

94.767

0.573
  recA Streptococcus pyogenes NZ131

59.692

94.477

0.564
  recA Lactococcus lactis subsp. cremoris KW2

57.895

93.895

0.544

Multiple sequence alignment