Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   TERTU_RS12455 Genome accession   NC_012997
Coordinates   3109217..3110245 (-) Length   342 a.a.
NCBI ID   WP_015818171.1    Uniprot ID   C5BMR1
Organism   Teredinibacter turnerae T7901     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3104217..3115245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TERTU_RS12435 (TERTU_2816) - 3104956..3105426 (-) 471 WP_041590231.1 TetR/AcrR family transcriptional regulator -
  TERTU_RS12440 (TERTU_2817) trpB 3105602..3106894 (+) 1293 WP_012779310.1 tryptophan synthase subunit beta -
  TERTU_RS12445 (TERTU_2818) trpA 3106878..3107642 (+) 765 WP_015820874.1 tryptophan synthase subunit alpha -
  TERTU_RS12450 (TERTU_2821) - 3108231..3108746 (-) 516 WP_015819704.1 regulatory protein RecX -
  TERTU_RS12455 (TERTU_2823) recA 3109217..3110245 (-) 1029 WP_015818171.1 recombinase RecA Machinery gene
  TERTU_RS12460 (TERTU_2824) - 3110496..3111014 (-) 519 WP_015818744.1 CinA family protein -
  TERTU_RS12465 (TERTU_2825) - 3111122..3111589 (+) 468 WP_228378146.1 DUF4124 domain-containing protein -
  TERTU_RS22220 - 3111693..3111878 (-) 186 Protein_2436 IS3 family transposase -
  TERTU_RS12475 (TERTU_2827) - 3112241..3112966 (-) 726 WP_015817785.1 hypothetical protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36728.88 Da        Isoelectric Point: 4.9333

>NTDB_id=34910 TERTU_RS12455 WP_015818171.1 3109217..3110245(-) (recA) [Teredinibacter turnerae T7901]
MDANKEKALQAALQQIDRQFGKGTVMRMGDKELEAIPAVSTGSLGLDVALGIGGLPKGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAAKLGVNVDDLIVSQPDTGEQALEVADMLVRSGAIDVLVVDSVAALTPKAEIEGEMGD
HHVGLQARLMSQALRKITGNIKNANCLAIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVIGSE
TRVKVVKNKVAPPFKQTEFQILYGTGINRLGEVIDYGVKLGLIDKAGAWYSYNGDKIGQGKNNAIQYLREHSDVAQTLED
RLKAELLGQSFDEAVEAEAESE

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=34910 TERTU_RS12455 WP_015818171.1 3109217..3110245(-) (recA) [Teredinibacter turnerae T7901]
ATGGATGCTAACAAAGAAAAAGCGTTGCAGGCGGCACTGCAACAAATTGACCGCCAGTTTGGTAAAGGCACCGTCATGCG
TATGGGTGACAAAGAGCTGGAAGCCATTCCAGCCGTGTCAACCGGTTCGCTAGGGCTGGATGTTGCCCTGGGCATTGGCG
GTTTGCCGAAAGGTCGGATTGTTGAAATCTACGGCCCGGAATCTTCCGGTAAAACCACACTTACGCTACAGGTGATTGCT
GAAGCACAACGCAAAGGTGGAACCTGTGCCTTCGTCGACGCCGAGCACGCACTTGACCCTATTTACGCAGCCAAGCTGGG
CGTCAACGTGGACGATCTTATCGTGTCGCAGCCAGATACCGGCGAACAAGCGTTGGAAGTCGCCGACATGCTGGTGCGTT
CAGGCGCAATTGATGTGTTGGTGGTCGACTCGGTGGCTGCACTCACGCCGAAAGCAGAAATTGAAGGCGAAATGGGAGAT
CACCACGTTGGCCTGCAGGCGCGATTGATGTCGCAAGCGCTGCGAAAAATCACTGGTAATATTAAAAACGCGAATTGTCT
GGCGATTTTTATCAACCAGATTCGTATGAAAATTGGCGTGATGTTCGGTAACCCGGAAACTACGACTGGCGGTAACGCGC
TGAAGTTCTACTCTTCTGTGCGCCTCGATATTCGTCGTATTGGTTCTGTGAAAGATGGCGATGAGGTTATTGGTTCCGAA
ACGCGAGTGAAGGTCGTTAAAAACAAAGTTGCTCCACCATTTAAGCAGACTGAATTCCAAATTCTATACGGTACCGGTAT
TAACCGTTTGGGTGAAGTAATTGATTACGGCGTTAAGCTGGGGCTTATCGACAAAGCGGGCGCCTGGTATAGCTACAACG
GCGATAAAATCGGGCAGGGTAAAAATAACGCTATTCAATATTTGCGTGAACACTCTGATGTTGCCCAAACACTTGAAGAC
CGACTTAAAGCAGAGCTTTTAGGCCAATCTTTCGACGAGGCCGTTGAAGCGGAAGCCGAAAGCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5BMR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.059

99.415

0.766
  recA Acinetobacter baylyi ADP1

72.886

100

0.731
  recA Acinetobacter baumannii D1279779

72.807

100

0.728
  recA Vibrio cholerae strain A1552

71.56

95.614

0.684
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.56

95.614

0.684
  recA Ralstonia pseudosolanacearum GMI1000

71.472

95.322

0.681
  recA Glaesserella parasuis strain SC1401

70.807

94.152

0.667
  recA Neisseria gonorrhoeae MS11

68.923

95.029

0.655
  recA Neisseria gonorrhoeae MS11

68.923

95.029

0.655
  recA Neisseria gonorrhoeae strain FA1090

68.923

95.029

0.655
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.831

93.275

0.614
  recA Helicobacter pylori 26695

63.303

95.614

0.605
  recA Helicobacter pylori strain NCTC11637

63.889

94.737

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

96.199

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

61.875

93.567

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

61.371

93.86

0.576
  recA Streptococcus mutans UA159

58.462

95.029

0.556
  recA Streptococcus pneumoniae Rx1

57.622

95.906

0.553
  recA Streptococcus pneumoniae D39

57.622

95.906

0.553
  recA Streptococcus pneumoniae R6

57.622

95.906

0.553
  recA Streptococcus pneumoniae TIGR4

57.622

95.906

0.553
  recA Streptococcus pyogenes NZ131

57.975

95.322

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.204

94.444

0.55
  recA Streptococcus mitis SK321

57.012

95.906

0.547
  recA Lactococcus lactis subsp. cremoris KW2

57.012

95.906

0.547
  recA Streptococcus mitis NCTC 12261

56.707

95.906

0.544

Multiple sequence alignment