Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EYZ66_RS09695 Genome accession   NZ_CP036423
Coordinates   2172976..2174013 (-) Length   345 a.a.
NCBI ID   WP_009576282.1    Uniprot ID   F3L3B5
Organism   Aequoribacter fuscus strain IMCC3088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2167976..2179013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYZ66_RS09675 (EYZ66_09675) - 2168398..2170119 (-) 1722 WP_009576286.1 SLC13 family permease -
  EYZ66_RS09680 (EYZ66_09680) - 2170301..2170933 (+) 633 WP_009576285.1 TetR/AcrR family transcriptional regulator -
  EYZ66_RS09685 (EYZ66_09685) - 2170996..2172456 (+) 1461 WP_050793428.1 NAD(P)/FAD-dependent oxidoreductase -
  EYZ66_RS09690 (EYZ66_09690) - 2172469..2172918 (-) 450 WP_009576283.1 regulatory protein RecX -
  EYZ66_RS09695 (EYZ66_09695) recA 2172976..2174013 (-) 1038 WP_009576282.1 recombinase RecA Machinery gene
  EYZ66_RS09700 (EYZ66_09700) msbA 2174235..2176034 (+) 1800 WP_009576281.1 lipid A export permease/ATP-binding protein MsbA -
  EYZ66_RS09705 (EYZ66_09705) - 2176000..2176935 (+) 936 WP_009576280.1 ELM1/GtrOC1 family putative glycosyltransferase -
  EYZ66_RS09710 (EYZ66_09710) - 2177007..2177795 (+) 789 WP_083814387.1 sulfotransferase -
  EYZ66_RS09715 (EYZ66_09715) - 2177805..2178524 (+) 720 WP_009576278.1 sulfotransferase family 2 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36803.10 Da        Isoelectric Point: 5.0192

>NTDB_id=348846 EYZ66_RS09695 WP_009576282.1 2172976..2174013(-) (recA) [Aequoribacter fuscus strain IMCC3088]
MDPNKQKALEAALAQIERQFGKGTVMRMGDSERVAIPSISTGSLGLDIALGIGGLPKGRICEIYGPESSGKTTLTLQVIA
EAQKLGGTAAFIDAEHALDPIYAERLGVQVDDLILSQPDTGEQALEVTEMLVRSGAVDVLVVDSVAALTPKAEIEGDMGD
SHVGLQARLLSQAMRKLTGSIKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEIVGNE
TRVKVVKNKVSPPFKQAEFQIMYGSGIYHNGELIDWGVKLGLIDKSGAWYAYKGDKIGQGKANAAKFLSDNKDIADEIEA
AIRAQTLTTAKPAEAPVAETQDAGE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=348846 EYZ66_RS09695 WP_009576282.1 2172976..2174013(-) (recA) [Aequoribacter fuscus strain IMCC3088]
ATGGATCCAAATAAGCAAAAAGCATTAGAGGCGGCATTAGCACAAATCGAGCGTCAGTTTGGTAAAGGCACCGTAATGCG
CATGGGTGACAGCGAACGTGTCGCCATCCCATCAATTTCCACCGGTTCACTTGGATTGGATATTGCTTTGGGTATTGGTG
GCTTGCCTAAGGGGCGTATTTGCGAAATTTATGGACCTGAGTCCTCCGGTAAAACGACACTCACGCTGCAAGTGATCGCA
GAGGCCCAGAAATTGGGTGGTACAGCGGCGTTTATTGATGCCGAACACGCGTTAGATCCTATATATGCCGAGCGCCTGGG
CGTTCAAGTTGATGACCTGATCTTGTCGCAGCCCGACACCGGAGAGCAAGCCCTTGAAGTCACCGAAATGCTGGTGCGTT
CTGGCGCAGTTGATGTATTAGTCGTCGATTCAGTGGCTGCCTTGACCCCCAAGGCCGAAATTGAAGGTGACATGGGTGAT
TCCCACGTTGGTTTGCAGGCGCGTCTATTAAGTCAGGCGATGCGCAAGTTAACGGGCTCGATCAAGCAAACCAATTGTTT
GGTGATTTTTATTAACCAAATTCGCATGAAGATCGGCGTGATGTTTGGTAGCCCAGAAACCACTACGGGTGGTAACGCCC
TTAAGTTTTACTCATCGGTTCGTCTCGATATCCGCCGTATTGGCGCGGTAAAAGAGGGCGACGAAATTGTGGGTAACGAA
ACTCGAGTTAAGGTGGTTAAGAACAAGGTGTCTCCACCCTTCAAACAGGCCGAGTTTCAGATCATGTACGGATCCGGCAT
TTACCACAACGGTGAGCTGATCGACTGGGGTGTCAAGCTCGGACTGATCGATAAATCGGGCGCTTGGTATGCCTACAAAG
GCGACAAAATTGGGCAAGGTAAGGCCAACGCCGCGAAGTTTCTAAGCGACAATAAAGACATTGCTGACGAGATCGAAGCA
GCCATTCGTGCCCAAACGCTGACGACTGCAAAGCCTGCAGAGGCGCCGGTGGCAGAGACTCAGGACGCTGGTGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F3L3B5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.824

98.551

0.777
  recA Acinetobacter baylyi ADP1

70.468

99.13

0.699
  recA Acinetobacter baumannii D1279779

72.644

95.362

0.693
  recA Vibrio cholerae strain A1552

71.951

95.072

0.684
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.951

95.072

0.684
  recA Neisseria gonorrhoeae MS11

71.077

94.203

0.67
  recA Neisseria gonorrhoeae MS11

71.077

94.203

0.67
  recA Neisseria gonorrhoeae strain FA1090

71.077

94.203

0.67
  recA Glaesserella parasuis strain SC1401

72.1

92.464

0.667
  recA Ralstonia pseudosolanacearum GMI1000

71.429

89.275

0.638
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.593

93.913

0.635
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

95.942

0.609
  recA Helicobacter pylori strain NCTC11637

64.506

93.913

0.606
  recA Helicobacter pylori 26695

64.506

93.913

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

63.75

92.754

0.591
  recA Streptococcus mutans UA159

61.846

94.203

0.583
  recA Streptococcus mitis NCTC 12261

61.846

94.203

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

60.606

95.652

0.58
  recA Streptococcus pneumoniae Rx1

61.231

94.203

0.577
  recA Streptococcus mitis SK321

61.231

94.203

0.577
  recA Streptococcus pneumoniae D39

61.231

94.203

0.577
  recA Streptococcus pneumoniae R6

61.231

94.203

0.577
  recA Streptococcus pneumoniae TIGR4

61.231

94.203

0.577
  recA Streptococcus pyogenes NZ131

60.308

94.203

0.568
  recA Lactococcus lactis subsp. cremoris KW2

59.568

93.913

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.538

94.203

0.542

Multiple sequence alignment