Detailed information NTG0034882

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: JDM1_RS09705
• Genome accession: NC_012984
• Coordinates: 2045442..2046584 (-)
• Length: 380 a.a.
• NCBI ID: WP_003641504.1
• Uniprot ID: A0A837NYD6
• Organism: Lactiplantibacillus plantarum JDM1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2040442..2051584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JDM1_RS09695 (JDM1_1923)	-	2042721..2043527 (-)	807	WP_003641506.1	TIGR00282 family metallophosphoesterase	-
JDM1_RS09700 (JDM1_1924)	rny	2043652..2045211 (-)	1560	WP_003644638.1	ribonuclease Y	-
JDM1_RS09705 (JDM1_1925)	recA	2045442..2046584 (-)	1143	WP_003641504.1	recombinase RecA	Machinery gene
JDM1_RS09710 (JDM1_1926)	cinA	2046676..2047938 (-)	1263	WP_015825733.1	competence/damage-inducible protein A	Machinery gene
JDM1_RS09715 (JDM1_1927)	pgsA	2048206..2048790 (-)	585	WP_003641502.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
JDM1_RS09720 (JDM1_1928)	-	2048813..2049685 (-)	873	WP_041161706.1	RodZ domain-containing protein	-
JDM1_RS09725 (JDM1_1929)	yfmH	2049789..2051090 (-)	1302	WP_015825735.1	EF-P 5-aminopentanol modification-associated protein YfmH	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 40651.93 Da
• Isoelectric Point: 5.3835

>NTDB_id=34882 JDM1_RS09705 WP_003641504.1 2045442..2046584(-) (recA) [Lactiplantibacillus plantarum JDM1]
MADARKAALDTALKKIEKNFGKGAIMRMGDAAQTTISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRENAKKYLDEHPDVMTEIRQ
KVRDAYGMDATGEETSETDDQAKEAKDKGTAKNGSKGQSKSTKATPAETALDLGDQPTEK

Nucleotide

• Length: 1143 bp

>NTDB_id=34882 JDM1_RS09705 WP_003641504.1 2045442..2046584(-) (recA) [Lactiplantibacillus plantarum JDM1]
TTGGCTGATGCACGGAAAGCAGCACTAGATACTGCCCTGAAAAAGATCGAAAAGAATTTCGGTAAAGGGGCGATTATGCG
GATGGGTGACGCTGCCCAGACGACTATTTCAACGATTTCAAGTGGATCGTTGGCCTTAGATGACGCGTTGGGTGTCGGCG
GCTACCCACGTGGTCGGATCGTGGAAATCTACGGTCCTGAAAGTTCAGGTAAAACGACCGTGGCACTACATGCGGTTGCT
GAAGTTCAAAAGCAGGGTGGTACGGCGGCCTATATCGATGCTGAAAACGCACTAGACCCCGTTTATGCGGAACACCTAGG
GGTCAACATTGATGACCTGTTACTTTCGCAACCAGATACTGGTGAACAAGGGCTTGAAATTGCAGATGCCTTAGTTTCCA
GTGGTGCGGTCGATATTTTAGTTGTTGACTCGGTGGCGGCCTTAGTGCCACGTGCCGAAATTGAAGGTGAAATGGGTGAC
GCACACGTTGGGTTACAAGCGCGGCTGATGTCACAAGCGCTCCGGAAGTTATCAGGGACATTGAACAAAACCAAGACAAT
CGCGTTATTTATCAATCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACGACTCCTGGTGGTCGGGCCT
TGAAATTTTACGCCACGATTCGTTTGGAAGTACGGCGGGCAGAACAGATCAAGGAAGGAACCAATATTATTGGTAACCGT
GTCCGGATCAAAGTCGTTAAGAACAAGGTTGCACCGCCATTTAAGCGTGCCGAAGTGGATATCATGTATGGTCAAGGTAT
CTCACAAACTGGTGAAATTGTTGATATGGCTGCTGAAAAGGATATTGTTAAGAAGAGTGGTTCTTGGTATTCATATGGTG
ACGATCGCATTGGTCAAGGCCGTGAAAATGCCAAGAAGTATTTGGACGAGCATCCTGATGTCATGACGGAGATTCGCCAA
AAGGTTCGTGATGCATACGGTATGGATGCAACTGGTGAAGAAACGTCTGAAACTGATGATCAGGCCAAAGAAGCTAAGGA
TAAGGGAACTGCTAAGAATGGCAGTAAGGGTCAAAGTAAGTCCACTAAAGCGACACCAGCGGAAACTGCTCTCGATCTCG
GCGACCAACCAACCGAAAAATAG

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (8-268)

3D structure

• AlphaFold DB: A0A837NYD6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Latilactobacillus sakei subsp. sakei 23K	84.412	89.474	0.755
recA	Bacillus subtilis subsp. subtilis str. 168	74.699	87.368	0.653
recA	Streptococcus pneumoniae D39	64.987	99.211	0.645
recA	Streptococcus pneumoniae R6	64.987	99.211	0.645
recA	Streptococcus pneumoniae TIGR4	64.987	99.211	0.645
recA	Streptococcus pneumoniae Rx1	64.987	99.211	0.645
recA	Streptococcus mitis SK321	63.395	99.211	0.629
recA	Streptococcus mitis NCTC 12261	63.13	99.211	0.626
recA	Streptococcus pyogenes NZ131	66.289	92.895	0.616
recA	Streptococcus mutans UA159	65.634	93.421	0.613
recA	Lactococcus lactis subsp. cremoris KW2	69.207	86.316	0.597
recA	Ralstonia pseudosolanacearum GMI1000	61.337	90.526	0.555
recA	Neisseria gonorrhoeae MS11	60.231	91.316	0.55
recA	Neisseria gonorrhoeae MS11	60.231	91.316	0.55
recA	Neisseria gonorrhoeae strain FA1090	60.231	91.316	0.55
recA	Vibrio cholerae O1 biovar El Tor strain E7946	59.884	90.526	0.542
recA	Vibrio cholerae strain A1552	59.884	90.526	0.542
recA	Acinetobacter baylyi ADP1	59.13	90.789	0.537
recA	Pseudomonas stutzeri DSM 10701	62.539	85	0.532
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	62.154	85.526	0.532
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.681	90.789	0.524
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.061	86.316	0.518
recA	Helicobacter pylori strain NCTC11637	57.185	89.737	0.513
recA	Acinetobacter baumannii D1279779	59.877	85.263	0.511
recA	Glaesserella parasuis strain SC1401	60.248	84.737	0.511
recA	Helicobacter pylori 26695	58.951	85.263	0.503