Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EYC56_RS14060 Genome accession   NZ_CP036255
Coordinates   2969833..2970867 (-) Length   344 a.a.
NCBI ID   WP_019300309.1    Uniprot ID   A0AAJ6GS25
Organism   Xanthomonas oryzae strain BB151-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2964833..2975867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC56_RS14040 (EYC56_14040) csrA 2965940..2966152 (-) 213 WP_003481884.1 carbon storage regulator CsrA -
  EYC56_RS14045 (EYC56_14045) alaS 2966292..2968940 (-) 2649 WP_053503200.1 alanine--tRNA ligase -
  EYC56_RS14050 (EYC56_14050) recX 2969042..2969530 (-) 489 WP_053503201.1 recombination regulator RecX -
  EYC56_RS14060 (EYC56_14060) recA 2969833..2970867 (-) 1035 WP_019300309.1 recombinase RecA Machinery gene
  EYC56_RS14065 (EYC56_14065) lexA 2971040..2971681 (-) 642 WP_011408885.1 transcriptional repressor LexA -
  EYC56_RS14070 (EYC56_14070) ubiB 2971770..2973446 (-) 1677 WP_053503252.1 2-polyprenylphenol 6-hydroxylase -
  EYC56_RS14075 (EYC56_14075) - 2973924..2974418 (-) 495 WP_011259512.1 CinA family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37244.87 Da        Isoelectric Point: 5.0776

>NTDB_id=347704 EYC56_RS14060 WP_019300309.1 2969833..2970867(-) (recA) [Xanthomonas oryzae strain BB151-3]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGDERIGQGKDNARTYLRDNPQVAVRL
EAELREKFQPAEAPREAGDDEEKE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=347704 EYC56_RS14060 WP_019300309.1 2969833..2970867(-) (recA) [Xanthomonas oryzae strain BB151-3]
ATGGACGAGAACAAGAAGCGCGCCCTTTCCGCCGCACTGAGCCAGATCGAAAAGCAATTCGGCAAGGGCTCGGTCATGCG
CATGGGCGACCGTGTCATCGAAGCGGTCGAAGTCATTCCGACCGGCTCGCTGATGCTGGATATCGCCCTGGGGATCGGCG
GCCTGCCGAAGGGGCGCGTAGTCGAAATCTACGGGCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGGCGATTGCC
CAGTGTCAGAAGCTGGGCGGCACCGCCGCCTTCATCGACGCCGAGCACGCGCTGGACCCGATCTATGCGGCCAAGCTGGG
TGTCAACGTCGACGATCTGCTGCTGTCGCAGCCGGATACCGGCGAGCAGGCGCTGGAAATTGCCGACATGCTGGTGCGTT
CGAGCTCGGTGGACATCGTGGTGATCGACTCGGTTGCCGCACTGACCCCGAAGGCAGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCGGGCCTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCAAGCTTACCGGCAACATCAAGCGCTCCAACACGCT
GGTGGTCTTCATCAATCAGCTGCGCATGAAGATCGGCGTCATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ATGCCTTGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGTCGTATCGGCGCAATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGTTGGCGCCTCCGTTCAAGCAGGTCGTGACCGAAATCCTGTACGGCGA
AGGCATCAGTCGCGAAGGCGAATTGATCGATATGGGCGTGGAAGCCAAGCTGGTCGAAAAGGCCGGCGCCTGGTACAGCT
ACGGCGATGAGCGCATCGGGCAGGGCAAGGACAATGCGCGGACTTACCTGCGCGACAACCCGCAGGTTGCGGTCCGGCTG
GAAGCCGAACTGCGCGAGAAGTTCCAGCCTGCCGAAGCGCCGCGCGAAGCCGGCGACGACGAAGAGAAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.058

100

0.701
  recA Pseudomonas stutzeri DSM 10701

70.623

97.965

0.692
  recA Ralstonia pseudosolanacearum GMI1000

75.719

90.988

0.689
  recA Acinetobacter baumannii D1279779

71.646

95.349

0.683
  recA Vibrio cholerae strain A1552

70.552

94.767

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.552

94.767

0.669
  recA Neisseria gonorrhoeae MS11

68.405

94.767

0.648
  recA Neisseria gonorrhoeae MS11

68.405

94.767

0.648
  recA Neisseria gonorrhoeae strain FA1090

68.405

94.767

0.648
  recA Glaesserella parasuis strain SC1401

68.111

93.895

0.64
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

97.093

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

61.377

97.093

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.038

92.151

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

61.846

94.477

0.584
  recA Helicobacter pylori strain NCTC11637

60.542

96.512

0.584
  recA Streptococcus pneumoniae R6

60.976

95.349

0.581
  recA Streptococcus mitis SK321

60.976

95.349

0.581
  recA Streptococcus pneumoniae TIGR4

60.976

95.349

0.581
  recA Streptococcus pneumoniae Rx1

60.976

95.349

0.581
  recA Streptococcus pneumoniae D39

60.976

95.349

0.581
  recA Helicobacter pylori 26695

60.241

96.512

0.581
  recA Streptococcus mitis NCTC 12261

60.671

95.349

0.578
  recA Streptococcus pyogenes NZ131

60.303

95.93

0.578
  recA Streptococcus mutans UA159

60

95.93

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.477

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.182

95.93

0.558

Multiple sequence alignment