Detailed information NTG0347498

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: EXU30_RS05140
• Genome accession: NZ_CP036200
• Coordinates: 1217874..1218926 (-)
• Length: 350 a.a.
• NCBI ID: WP_130598123.1
• Uniprot ID: A0A411PF17
• Organism: Shewanella maritima strain D4-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1212874..1223926

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EXU30_RS05125 (EXU30_05125)	csrA	1213580..1213777 (-)	198	WP_011865020.1	carbon storage regulator CsrA	-
EXU30_RS05130 (EXU30_05130)	alaS	1214525..1217146 (-)	2622	WP_130598121.1	alanine--tRNA ligase	-
EXU30_RS05135 (EXU30_05135)	-	1217425..1217880 (-)	456	WP_341274645.1	regulatory protein RecX	-
EXU30_RS05140 (EXU30_05140)	recA	1217874..1218926 (-)	1053	WP_130598123.1	recombinase RecA	Machinery gene
EXU30_RS05145 (EXU30_05145)	mutS	1219412..1221988 (+)	2577	WP_130598124.1	DNA mismatch repair protein MutS	-
EXU30_RS05150 (EXU30_05150)	rpoS	1222118..1223095 (-)	978	WP_130598125.1	RNA polymerase sigma factor RpoS	-

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 37309.80 Da
• Isoelectric Point: 5.0544

>NTDB_id=347498 EXU30_RS05140 WP_130598123.1 1217874..1218926(-) (recA) [Shewanella maritima strain D4-2]
MKVDPNKEKALNAVLGQIEKQFGKGSIMKLGQDRTMDVETISTGSLSLDAALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQKEGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVG
NETRVKVVKNKIAAPFKQAEFQILYGEGINRTGELVDLGVKHKLLDKAGAWYSYKGDKIGQGRANAGRFLGENPAVAAEI
EAALRGMLLANKADAVEGEENIDLETGEVF

Nucleotide

• Length: 1053 bp

>NTDB_id=347498 EXU30_RS05140 WP_130598123.1 1217874..1218926(-) (recA) [Shewanella maritima strain D4-2]
ATGAAGGTTGATCCGAATAAAGAGAAAGCACTGAACGCTGTATTAGGTCAGATTGAAAAGCAATTTGGTAAAGGTTCAAT
TATGAAGCTTGGCCAAGACCGCACCATGGACGTTGAGACTATCTCTACCGGTTCATTATCATTAGACGCAGCGCTAGGCG
CGGGCGGTTTACCTATGGGACGTATCGTTGAGATTTATGGTCCTGAGTCTTCTGGTAAAACGACATTAACCCTTGAAGTT
ATTGCTGCGGCGCAAAAAGAAGGTAAAACCTGTGCCTTTATCGATGCTGAGCACGCGCTTGACCCAATTTATGCTAAAAA
GCTAGGTGTTGATATTGATAACCTACTTTGTTCTCAGCCTGATACTGGTGAGCAAGCATTAGAAATTTGTGATGCGTTAA
CTCGCTCTGGTGCAGTTGATGTGATTATTGTCGACTCGGTAGCGGCACTAACACCAAAAGCTGAGATTGAAGGCGAGATT
GGTGATTCGCACATGGGTCTTGCTGCTCGTATGATGAGTCAAGCAATGCGTAAACTTGCTGGTAACTTAAAGCAGTCAAA
TACCCTGCTTATCTTCATTAACCAAATCCGTATGAAGATTGGCGTTATGTTCGGTAACCCTGAAACAACAACCGGTGGTA
ACGCACTTAAGTTCTACGCTTCTGTTCGCTTAGATATTCGCCGTACAGGTGCAATTAAAGATGGTGATGAAGTTGTAGGT
AACGAAACACGCGTCAAAGTGGTGAAAAACAAAATTGCTGCACCATTTAAGCAAGCTGAATTCCAAATTCTATATGGCGA
AGGCATTAACCGCACTGGTGAGCTAGTTGACCTAGGTGTCAAGCACAAGCTACTTGATAAAGCTGGCGCTTGGTACAGCT
ATAAAGGCGACAAGATTGGTCAAGGCCGTGCTAATGCCGGTCGTTTCTTAGGCGAAAACCCAGCAGTTGCTGCTGAAATT
GAAGCGGCGCTTCGCGGCATGTTGCTAGCGAACAAAGCAGATGCAGTTGAAGGTGAAGAAAATATCGACTTAGAGACTGG
TGAAGTATTCTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-270)

3D structure

• AlphaFold DB: A0A411PF17

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae O1 biovar El Tor strain E7946	82.875	93.429	0.774
recA	Vibrio cholerae strain A1552	82.875	93.429	0.774
recA	Pseudomonas stutzeri DSM 10701	72.892	94.857	0.691
recA	Acinetobacter baumannii D1279779	70.145	98.571	0.691
recA	Acinetobacter baylyi ADP1	69.942	98.857	0.691
recA	Glaesserella parasuis strain SC1401	68.571	100	0.686
recA	Ralstonia pseudosolanacearum GMI1000	68.712	93.143	0.64
recA	Neisseria gonorrhoeae MS11	68.731	92.286	0.634
recA	Neisseria gonorrhoeae MS11	68.731	92.286	0.634
recA	Neisseria gonorrhoeae strain FA1090	68.731	92.286	0.634
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	61.159	98.571	0.603
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	61.493	95.714	0.589
recA	Streptococcus pneumoniae D39	60.947	96.571	0.589
recA	Streptococcus pneumoniae TIGR4	60.947	96.571	0.589
recA	Streptococcus pneumoniae R6	60.947	96.571	0.589
recA	Streptococcus pneumoniae Rx1	60.947	96.571	0.589
recA	Streptococcus mitis SK321	62.195	93.714	0.583
recA	Streptococcus mitis NCTC 12261	61.585	93.714	0.577
recA	Helicobacter pylori strain NCTC11637	60.36	95.143	0.574
recA	Helicobacter pylori 26695	60.06	95.143	0.571
recA	Streptococcus pyogenes NZ131	61.61	92.286	0.569
recA	Bacillus subtilis subsp. subtilis str. 168	61.875	91.429	0.566
recA	Streptococcus mutans UA159	60.991	92.286	0.563
recA	Latilactobacillus sakei subsp. sakei 23K	60.502	91.143	0.551
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.568	92.571	0.551
recA	Lactococcus lactis subsp. cremoris KW2	58.841	93.714	0.551