Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PC1_RS16010 Genome accession   NC_012917
Coordinates   3621800..3622873 (-) Length   357 a.a.
NCBI ID   WP_015841372.1    Uniprot ID   A0AAW3T262
Organism   Pectobacterium carotovorum subsp. carotovorum PC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3616800..3627873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PC1_RS15995 (PC1_3210) csrA 3617983..3618168 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  PC1_RS16000 (PC1_3211) alaS 3618494..3621121 (-) 2628 WP_015841370.1 alanine--tRNA ligase -
  PC1_RS16005 (PC1_3212) recX 3621260..3621754 (-) 495 WP_015841371.1 recombination regulator RecX -
  PC1_RS16010 (PC1_3213) recA 3621800..3622873 (-) 1074 WP_015841372.1 recombinase RecA Machinery gene
  PC1_RS16015 (PC1_3214) pncC 3622981..3623475 (-) 495 WP_015841373.1 nicotinamide-nucleotide amidase -
  PC1_RS16020 (PC1_3215) - 3623702..3624037 (-) 336 WP_015841374.1 hypothetical protein -
  PC1_RS16025 (PC1_3216) - 3624528..3625016 (+) 489 WP_015841375.1 SRPBCC family protein -
  PC1_RS16030 (PC1_3217) - 3625100..3625774 (+) 675 WP_015841376.1 MarC family NAAT transporter -
  PC1_RS16035 (PC1_3218) - 3625953..3627551 (+) 1599 WP_015841377.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38246.71 Da        Isoelectric Point: 5.0681

>NTDB_id=34528 PC1_RS16010 WP_015841372.1 3621800..3622873(-) (recA) [Pectobacterium carotovorum subsp. carotovorum PC1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPAVAAEL
DKKLREMLLHKGNELTPATAGNSHDEDAFADEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=34528 PC1_RS16010 WP_015841372.1 3621800..3622873(-) (recA) [Pectobacterium carotovorum subsp. carotovorum PC1]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGCCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACTATTTCTACAGGCTCCTTGTCCCTTGATATTGCTCTGGGGG
CCGGTGGTTTACCGATGGGCCGTATCGTTGAGATTTATGGCCCGGAATCTTCCGGTAAAACAACGCTAACCTTACAGGTG
ATTGCTGCCGCTCAGCGTGAAGGCAAAACCTGTGCGTTCATCGATGCTGAACATGCGTTGGATCCGATTTATGCGAAAAA
ACTTGGCGTCGATATCGATAATCTGCTGTGTTCTCAGCCGGATACCGGCGAGCAAGCGCTGGAAATCTGTGATGCACTAA
CGCGCTCCGGCGCGGTTGACGTTATCATTGTCGACTCCGTTGCAGCTTTGACGCCGAAAGCCGAAATTGAAGGTGAAATC
GGCGACTCCCACATGGGGCTGGCTGCACGTATGATGAGTCAGGCTATGCGTAAACTTGCAGGTAACCTGAAACAAGCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTCGGTAACCCTGAAACCACCACCGGTGGTA
ACGCACTGAAGTTTTATGCTTCCGTTCGTCTGGATATTCGCCGTACTGGTGCGATTAAGGAAGGCGAAGAAGTCGTCGGC
AGCGAAACTCGCGTTAAAGTCGTGAAGAATAAAGTGGCAGCACCGTTCAAACAGGCTGAGTTCCAGATTCTGTACGGCGA
AGGTATCAACATCCACGGTGAGCTGGTTGATCTGGGTGTGAAACACAAACTGATCGAAAAAGCGGGTGCCTGGTATAGCT
ATAACGGCGACAAGATTGGTCAGGGCAAAGCAAATGCCTGTAATTTCCTGAAAGAGAACCCGGCGGTTGCTGCGGAGCTG
GATAAGAAATTGCGTGAAATGTTGCTGCATAAAGGCAATGAGCTGACGCCTGCCACAGCAGGCAATAGCCATGACGAAGA
TGCATTCGCCGATGAAGGTAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.285

97.199

0.81
  recA Vibrio cholerae strain A1552

83.285

97.199

0.81
  recA Pseudomonas stutzeri DSM 10701

75.841

91.597

0.695
  recA Acinetobacter baylyi ADP1

70.64

96.359

0.681
  recA Glaesserella parasuis strain SC1401

68.555

98.88

0.678
  recA Acinetobacter baumannii D1279779

72.424

92.437

0.669
  recA Neisseria gonorrhoeae MS11

69.325

91.317

0.633
  recA Neisseria gonorrhoeae MS11

69.325

91.317

0.633
  recA Neisseria gonorrhoeae strain FA1090

69.325

91.317

0.633
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.115

0.613
  recA Streptococcus mitis SK321

60.282

99.44

0.599
  recA Streptococcus pneumoniae R6

59.718

99.44

0.594
  recA Streptococcus mitis NCTC 12261

59.718

99.44

0.594
  recA Streptococcus pneumoniae TIGR4

59.718

99.44

0.594
  recA Streptococcus pneumoniae Rx1

59.718

99.44

0.594
  recA Streptococcus pneumoniae D39

59.718

99.44

0.594
  recA Helicobacter pylori strain NCTC11637

62.614

92.157

0.577
  recA Helicobacter pylori 26695

62.31

92.157

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

93.838

0.566
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

91.597

0.566
  recA Lactococcus lactis subsp. cremoris KW2

62.539

90.476

0.566
  recA Streptococcus pyogenes NZ131

62.154

91.036

0.566
  recA Streptococcus mutans UA159

61.846

91.036

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.036

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

89.916

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

91.317

0.535

Multiple sequence alignment