Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | EXN22_RS07710 | Genome accession | NZ_CP035952 |
| Coordinates | 1686229..1687296 (+) | Length | 355 a.a. |
| NCBI ID | WP_130263503.1 | Uniprot ID | A0A411MFY1 |
| Organism | Pseudomonas tructae strain SNU WT1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1654214..1687296 | 1686229..1687296 | within | 0 |
Gene organization within MGE regions
Location: 1654214..1687296
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXN22_RS07530 (EXN22_07530) | - | 1654214..1655101 (-) | 888 | WP_130263474.1 | LysR substrate-binding domain-containing protein | - |
| EXN22_RS07535 (EXN22_07535) | - | 1655208..1656320 (+) | 1113 | WP_130263475.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| EXN22_RS07540 (EXN22_07540) | fghA | 1656329..1657183 (+) | 855 | WP_130263476.1 | S-formylglutathione hydrolase | - |
| EXN22_RS07545 (EXN22_07545) | ispF | 1657255..1657728 (+) | 474 | WP_130263477.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| EXN22_RS07550 (EXN22_07550) | truD | 1657725..1658783 (+) | 1059 | WP_130263478.1 | tRNA pseudouridine(13) synthase TruD | - |
| EXN22_RS07555 (EXN22_07555) | surE | 1658771..1659520 (+) | 750 | WP_130263479.1 | 5'/3'-nucleotidase SurE | - |
| EXN22_RS07560 (EXN22_07560) | - | 1659520..1660197 (+) | 678 | WP_130263480.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| EXN22_RS07565 (EXN22_07565) | - | 1660376..1661272 (+) | 897 | WP_130263481.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| EXN22_RS07570 (EXN22_07570) | rpoS | 1661379..1662386 (+) | 1008 | WP_130263482.1 | RNA polymerase sigma factor RpoS | - |
| EXN22_RS07575 (EXN22_07575) | fdxA | 1662922..1663245 (-) | 324 | WP_038996711.1 | ferredoxin FdxA | - |
| EXN22_RS07580 (EXN22_07580) | mutS | 1663386..1665956 (-) | 2571 | WP_130263483.1 | DNA mismatch repair protein MutS | - |
| EXN22_RS07585 (EXN22_07585) | - | 1666117..1666860 (+) | 744 | WP_123565785.1 | XRE family transcriptional regulator | - |
| EXN22_RS07590 (EXN22_07590) | - | 1667334..1668353 (+) | 1020 | WP_177414007.1 | colicin-like pore-forming protein | - |
| EXN22_RS07595 (EXN22_07595) | - | 1668361..1668693 (-) | 333 | WP_165392194.1 | colicin E1 family microcin immunity protein | - |
| EXN22_RS07600 (EXN22_07600) | - | 1668890..1669237 (+) | 348 | WP_130263485.1 | phage holin family protein | - |
| EXN22_RS07605 (EXN22_07605) | - | 1669299..1669817 (+) | 519 | WP_130263486.1 | hypothetical protein | - |
| EXN22_RS07610 (EXN22_07610) | - | 1669814..1670374 (+) | 561 | WP_130263487.1 | phage baseplate assembly protein V | - |
| EXN22_RS07615 (EXN22_07615) | - | 1670418..1670615 (+) | 198 | WP_130263488.1 | hypothetical protein | - |
| EXN22_RS07620 (EXN22_07620) | - | 1670620..1670946 (+) | 327 | WP_130263489.1 | GPW/gp25 family protein | - |
| EXN22_RS07625 (EXN22_07625) | - | 1670943..1671824 (+) | 882 | WP_130263490.1 | baseplate J/gp47 family protein | - |
| EXN22_RS07630 (EXN22_07630) | - | 1671826..1672434 (+) | 609 | WP_130263491.1 | phage tail protein I | - |
| EXN22_RS26315 | - | 1672427..1675111 (+) | 2685 | WP_325053300.1 | phage tail protein | - |
| EXN22_RS07645 (EXN22_07645) | - | 1675121..1675717 (+) | 597 | WP_130263492.1 | tail fiber assembly protein | - |
| EXN22_RS07650 (EXN22_07650) | - | 1675797..1676963 (+) | 1167 | WP_130263493.1 | phage tail sheath family protein | - |
| EXN22_RS07655 (EXN22_07655) | - | 1676976..1677485 (+) | 510 | WP_038996697.1 | phage major tail tube protein | - |
| EXN22_RS07660 (EXN22_07660) | - | 1677495..1677797 (+) | 303 | WP_130263494.1 | phage tail assembly protein | - |
| EXN22_RS07665 (EXN22_07665) | - | 1677938..1680361 (+) | 2424 | WP_130263495.1 | hypothetical protein | - |
| EXN22_RS07670 (EXN22_07670) | - | 1680371..1681216 (+) | 846 | WP_130263496.1 | phage tail protein | - |
| EXN22_RS07675 (EXN22_07675) | - | 1681191..1681397 (+) | 207 | WP_130263497.1 | tail protein X | - |
| EXN22_RS07680 (EXN22_07680) | - | 1681466..1682518 (+) | 1053 | WP_130263498.1 | phage late control D family protein | - |
| EXN22_RS07685 (EXN22_07685) | - | 1682543..1683088 (+) | 546 | WP_130263499.1 | glycoside hydrolase family 19 protein | - |
| EXN22_RS07690 (EXN22_07690) | - | 1683085..1683585 (+) | 501 | WP_233281689.1 | lysis system i-spanin subunit Rz | - |
| EXN22_RS07695 (EXN22_07695) | - | 1683693..1684991 (+) | 1299 | WP_130263500.1 | colicin-like pore-forming protein | - |
| EXN22_RS07700 (EXN22_07700) | - | 1685065..1685628 (+) | 564 | WP_130263501.1 | hypothetical protein | - |
| EXN22_RS07705 (EXN22_07705) | - | 1685643..1686125 (+) | 483 | WP_130263502.1 | CinA family protein | - |
| EXN22_RS07710 (EXN22_07710) | recA | 1686229..1687296 (+) | 1068 | WP_130263503.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 37765.19 Da Isoelectric Point: 5.5142
>NTDB_id=345236 EXN22_RS07710 WP_130263503.1 1686229..1687296(+) (recA) [Pseudomonas tructae strain SNU WT1]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVLHGFLEKSGAWYSYQGSKIGQGKANSAKFLQENPEIAATLEK
QIRDKLLNAGAVEAAGKAAVADAEPEDLADANADY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVLHGFLEKSGAWYSYQGSKIGQGKANSAKFLQENPEIAATLEK
QIRDKLLNAGAVEAAGKAAVADAEPEDLADANADY
Nucleotide
Download Length: 1068 bp
>NTDB_id=345236 EXN22_RS07710 WP_130263503.1 1686229..1687296(+) (recA) [Pseudomonas tructae strain SNU WT1]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGGCAAATCGAGCGTCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCCATTCCGGCCATTTCCACCGGTTCCCTGGGCCTGGACATCGCCCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTCGAAATCTACGGCCCGGAGTCGTCCGGTAAAACCACCCTGACCCTGTCGGTGATCGCC
CAGGCACAGAAGGCAGGCGCTACCTGTGCCTTCGTCGACGCCGAGCACGCCCTGGACCCGGAGTACGCCGGCAAGCTGGG
CGTCAATGTCGATGACCTGCTGGTCTCGCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGTTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTACCCAAGGCCGAGATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGCAAAATTACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCGTCGGTCCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGACGGCGACGAAGTGGTCGGCAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCGCCATTCCGTCAGGCTGAATTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATCGACCTGGGCGTGCTGCACGGCTTCCTGGAAAAATCCGGCGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGCCAGGGCAAGGCCAACTCGGCCAAGTTCCTCCAGGAGAACCCGGAAATCGCCGCGACCCTGGAGAAG
CAGATCCGCGACAAGCTGCTTAATGCCGGAGCTGTTGAAGCCGCTGGTAAAGCCGCAGTAGCCGATGCCGAGCCGGAAGA
TCTGGCTGACGCTAACGCTGACTATTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGGCAAATCGAGCGTCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCCATTCCGGCCATTTCCACCGGTTCCCTGGGCCTGGACATCGCCCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTCGAAATCTACGGCCCGGAGTCGTCCGGTAAAACCACCCTGACCCTGTCGGTGATCGCC
CAGGCACAGAAGGCAGGCGCTACCTGTGCCTTCGTCGACGCCGAGCACGCCCTGGACCCGGAGTACGCCGGCAAGCTGGG
CGTCAATGTCGATGACCTGCTGGTCTCGCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGTTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTACCCAAGGCCGAGATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGCAAAATTACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCGTCGGTCCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGACGGCGACGAAGTGGTCGGCAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCGCCATTCCGTCAGGCTGAATTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATCGACCTGGGCGTGCTGCACGGCTTCCTGGAAAAATCCGGCGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGCCAGGGCAAGGCCAACTCGGCCAAGTTCCTCCAGGAGAACCCGGAAATCGCCGCGACCCTGGAGAAG
CAGATCCGCGACAAGCTGCTTAATGCCGGAGCTGTTGAAGCCGCTGGTAAAGCCGCAGTAGCCGATGCCGAGCCGGAAGA
TCTGGCTGACGCTAACGCTGACTATTGA
Similar proteins
Only experimentally validated proteins are listed.