Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PMF13cell1_RS23365 Genome accession   NZ_CP035945
Coordinates   5248275..5249441 (-) Length   388 a.a.
NCBI ID   WP_130182298.1    Uniprot ID   -
Organism   Blautia producta strain PMF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5243275..5254441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMF13cell1_RS23345 (PMF13cell1_04677) - 5243570..5244139 (-) 570 WP_130182296.1 stage II sporulation protein M -
  PMF13cell1_RS23350 (PMF13cell1_04678) rny 5244394..5245953 (-) 1560 WP_044953616.1 ribonuclease Y -
  PMF13cell1_RS23355 (PMF13cell1_04679) - 5246203..5247456 (+) 1254 WP_205730502.1 transposase -
  PMF13cell1_RS23360 (PMF13cell1_04680) - 5247664..5248275 (-) 612 WP_130182297.1 regulatory protein RecX -
  PMF13cell1_RS23365 (PMF13cell1_04681) recA 5248275..5249441 (-) 1167 WP_130182298.1 recombinase RecA Machinery gene
  PMF13cell1_RS23370 (PMF13cell1_04682) - 5249960..5250217 (-) 258 WP_018596495.1 spore coat protein -
  PMF13cell1_RS23375 (PMF13cell1_04683) - 5250231..5250416 (-) 186 WP_018596496.1 hypothetical protein -
  PMF13cell1_RS23380 (PMF13cell1_04684) - 5250505..5252505 (-) 2001 WP_130182299.1 ABC transporter permease -
  PMF13cell1_RS23385 (PMF13cell1_04685) - 5252495..5253262 (-) 768 WP_130182300.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41754.70 Da        Isoelectric Point: 6.0348

>NTDB_id=345206 PMF13cell1_RS23365 WP_130182298.1 5248275..5249441(-) (recA) [Blautia producta strain PMF1]
MVKEDKLKALDAALGQIEKQFGKGSVMKLGDSSVHMNVETVPTGSLSLDIALGLGGIPKGRIVEVYGPESSGKTTVALHM
VAEVQKRGGIAGFIDAEHALDPAYARHIGVDVDNLYISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPRAEIEGDM
GDAHVGLQARLMSQALRKLTAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRIEALKQGGEIVG
NRTRIKVVKNKIAPPFKEAEFDIMFGQGISKAGDILDLAASLGIINKSGAWYAYKDGKIGQGRENAKQYLNENPEIADEV
EAKVREHYGLLEGKTEEESSKDTKEKKADDKAAAAKASDAKAQDMKAPEMKAAEIPAAQRAKKENEEV

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=345206 PMF13cell1_RS23365 WP_130182298.1 5248275..5249441(-) (recA) [Blautia producta strain PMF1]
ATGGTCAAAGAAGATAAATTGAAAGCCCTGGACGCGGCTCTGGGACAGATCGAGAAGCAGTTTGGAAAAGGTTCTGTTAT
GAAACTGGGCGATTCCTCCGTACATATGAATGTGGAGACTGTGCCGACAGGTTCTCTGAGTCTTGATATAGCGTTAGGCC
TGGGCGGAATTCCCAAGGGAAGGATCGTAGAGGTCTACGGACCGGAATCCAGTGGTAAGACCACCGTGGCACTGCACATG
GTGGCTGAAGTACAGAAGAGAGGCGGAATTGCCGGATTCATTGATGCAGAGCATGCTCTGGATCCTGCATATGCCAGGCA
TATTGGTGTGGATGTAGACAACCTCTATATTTCACAGCCGGATAATGGTGAGCAGGCTCTGGAGATCACAGAGACTATGG
TGCGTTCCGGCGCTGTAGACATTGTGATCGTGGACTCTGTTGCTGCTCTGGTACCAAGAGCTGAGATAGAGGGGGATATG
GGGGATGCCCATGTAGGCCTGCAGGCACGTCTTATGTCCCAGGCGCTCCGTAAGCTGACGGCTGTTATCAGTAAATCCAA
CTGTATTGTTATCTTTATCAATCAGCTCCGTGAGAAAGTCGGCGTAATGTTCGGTAATCCGGAGACCACTACAGGCGGCC
GTGCCCTGAAGTTCTATTCCTCCATCCGTTTGGATGTCAGAAGGATCGAGGCTCTGAAGCAGGGCGGTGAGATCGTGGGC
AACCGTACCAGGATCAAGGTGGTTAAGAATAAGATCGCACCTCCTTTTAAGGAGGCTGAATTTGATATTATGTTCGGCCA
GGGAATCTCAAAAGCAGGAGATATTCTGGATCTGGCCGCAAGTCTGGGAATCATAAATAAGAGCGGTGCCTGGTATGCCT
ATAAGGATGGAAAGATTGGCCAGGGACGTGAAAACGCGAAGCAGTACTTAAATGAAAATCCGGAAATAGCAGATGAAGTG
GAAGCAAAAGTCCGGGAACATTACGGACTTCTGGAGGGAAAGACAGAAGAAGAGAGCAGTAAAGATACAAAAGAAAAAAA
AGCTGATGACAAAGCCGCTGCCGCAAAAGCTTCTGATGCGAAAGCCCAGGATATGAAAGCACCGGAAATGAAGGCAGCAG
AGATACCTGCCGCCCAGCGTGCAAAAAAAGAAAATGAGGAAGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.939

84.021

0.588
  recA Streptococcus pneumoniae R6

65.517

89.691

0.588
  recA Streptococcus pneumoniae Rx1

65.517

89.691

0.588
  recA Streptococcus pneumoniae D39

65.517

89.691

0.588
  recA Streptococcus pneumoniae TIGR4

65.517

89.691

0.588
  recA Streptococcus mutans UA159

64.023

90.979

0.582
  recA Streptococcus mitis NCTC 12261

66.077

87.371

0.577
  recA Streptococcus mitis SK321

65.487

87.371

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

66.667

85.052

0.567
  recA Acinetobacter baylyi ADP1

62.428

89.175

0.557
  recA Pseudomonas stutzeri DSM 10701

66.149

82.99

0.549
  recA Glaesserella parasuis strain SC1401

66.149

82.99

0.549
  recA Neisseria gonorrhoeae MS11

64.438

84.794

0.546
  recA Neisseria gonorrhoeae strain FA1090

64.438

84.794

0.546
  recA Neisseria gonorrhoeae MS11

64.438

84.794

0.546
  recA Acinetobacter baumannii D1279779

65.432

83.505

0.546
  recA Vibrio cholerae strain A1552

65.325

83.247

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.325

83.247

0.544
  recA Streptococcus pyogenes NZ131

63.636

85.052

0.541
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.024

84.536

0.541
  recA Lactococcus lactis subsp. cremoris KW2

63.526

84.794

0.539
  recA Helicobacter pylori strain NCTC11637

62.918

84.794

0.534
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.805

84.536

0.531
  recA Helicobacter pylori 26695

62.614

84.794

0.531
  recA Ralstonia pseudosolanacearum GMI1000

65.287

80.928

0.528
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.112

82.99

0.515

Multiple sequence alignment