Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Len3610_RS05225 Genome accession   NZ_CP035925
Coordinates   1030799..1031842 (+) Length   347 a.a.
NCBI ID   WP_176447019.1    Uniprot ID   A0A7H8S548
Organism   Lentibacillus sp. CBA3610     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1025799..1036842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Len3610_RS05200 (Len3610_05215) - 1026264..1026521 (+) 258 WP_176447014.1 DUF3243 domain-containing protein -
  Len3610_RS05205 (Len3610_05220) - 1026884..1027675 (+) 792 WP_176447015.1 YmfK family protein -
  Len3610_RS05210 (Len3610_05225) - 1027780..1028712 (+) 933 WP_176447016.1 helix-turn-helix domain-containing protein -
  Len3610_RS05215 (Len3610_05230) pgsA 1028795..1029373 (+) 579 WP_176447017.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Len3610_RS05220 (Len3610_05235) - 1029373..1030617 (+) 1245 WP_176447018.1 competence/damage-inducible protein A -
  Len3610_RS05225 (Len3610_05240) recA 1030799..1031842 (+) 1044 WP_176447019.1 recombinase RecA Machinery gene
  Len3610_RS05230 (Len3610_05245) rny 1032557..1034122 (+) 1566 WP_176447020.1 ribonuclease Y -
  Len3610_RS05235 (Len3610_05250) - 1034213..1035010 (+) 798 WP_176447021.1 TIGR00282 family metallophosphoesterase -
  Len3610_RS05240 (Len3610_05255) - 1035159..1035419 (+) 261 WP_010530699.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37559.35 Da        Isoelectric Point: 4.7834

>NTDB_id=345039 Len3610_RS05225 WP_176447019.1 1030799..1031842(+) (recA) [Lentibacillus sp. CBA3610]
MGDRKQALDMALKQIEKQFGKGSIMKLGEQEGQKVATIPSGSLALDVALGIGGYPRGRVVEVYGPESSGKTTVALHAIAE
AQQQGGQAAFIDAEHALDPTYARALGVDIEELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
RLKVVKNKVAPPFKQAEVDIMYGEGISKEGEILDIGSDLDIVTKSGAWYSYNSERLGQGRENAKQFLKENENVKQEIHQA
VRGHYNLDDTPDEESETEEPNQESLDV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=345039 Len3610_RS05225 WP_176447019.1 1030799..1031842(+) (recA) [Lentibacillus sp. CBA3610]
TTGGGAGATAGAAAACAAGCTTTAGACATGGCGTTAAAACAAATTGAAAAACAGTTTGGAAAAGGTTCCATTATGAAACT
GGGTGAACAGGAAGGGCAGAAGGTGGCAACGATTCCAAGTGGTTCACTGGCTTTAGACGTAGCTTTGGGAATCGGGGGTT
ACCCAAGAGGACGTGTTGTGGAAGTTTACGGTCCGGAGTCTTCCGGTAAAACGACAGTCGCTTTGCATGCCATTGCTGAA
GCTCAGCAGCAGGGTGGACAAGCTGCTTTTATTGATGCTGAACATGCACTTGACCCAACTTATGCCCGGGCACTTGGTGT
GGATATTGAGGAATTGCTCTTATCACAGCCGGACACCGGAGAACAGGCACTGGAAATCGCTGAAGCCTTGGTACGCAGTG
GAGCGGTTGATATAATTGTAGTAGATTCTGTGGCAGCATTGGTTCCAAAAGCAGAAATTGAAGGTGAAATGGGAGACTCG
CACGTCGGTTTGCAGGCACGCTTGATGTCCCAAGCATTGCGAAAATTATCCGGGGCGATCAACAAGTCAAAAACGACTGC
TGTCTTCATTAACCAAATCCGGGAAAAAGTTGGGGTTATGTTCGGAAATCCGGAAACGACTCCGGGCGGCCGTGCCCTTA
AATTCTATTCATCTGTCAGACTGGAAGTGCGCCGTGCCGAAACACTTAAACAAGGAAATGACATGGTAGGGAATAAAACA
AGATTAAAAGTTGTTAAAAACAAGGTTGCTCCACCGTTCAAACAAGCAGAGGTCGACATTATGTATGGTGAAGGGATTTC
GAAAGAAGGCGAAATCCTGGACATTGGTTCGGATTTGGATATCGTTACAAAAAGTGGTGCATGGTATTCTTATAATTCAG
AACGGCTTGGACAAGGAAGGGAAAATGCTAAACAGTTCCTCAAAGAAAATGAGAATGTCAAACAGGAAATTCATCAGGCC
GTCCGCGGACATTATAATCTGGATGACACACCGGATGAAGAATCGGAAACAGAAGAACCCAATCAGGAAAGCCTGGATGT
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8S548

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.242

95.101

0.801
  recA Latilactobacillus sakei subsp. sakei 23K

72.941

97.983

0.715
  recA Streptococcus mitis SK321

66.106

100

0.68
  recA Streptococcus mitis NCTC 12261

65.826

100

0.677
  recA Streptococcus pneumoniae R6

66.857

100

0.674
  recA Streptococcus pneumoniae Rx1

66.857

100

0.674
  recA Streptococcus pneumoniae D39

66.857

100

0.674
  recA Streptococcus pneumoniae TIGR4

66.857

100

0.674
  recA Streptococcus mutans UA159

66.382

100

0.671
  recA Streptococcus pyogenes NZ131

68.196

94.236

0.643
  recA Lactococcus lactis subsp. cremoris KW2

66.967

95.965

0.643
  recA Neisseria gonorrhoeae strain FA1090

62.609

99.424

0.622
  recA Neisseria gonorrhoeae MS11

62.609

99.424

0.622
  recA Neisseria gonorrhoeae MS11

62.609

99.424

0.622
  recA Ralstonia pseudosolanacearum GMI1000

66.562

91.354

0.608
  recA Glaesserella parasuis strain SC1401

59.773

100

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.471

97.983

0.602
  recA Helicobacter pylori 26695

61.111

98.559

0.602
  recA Helicobacter pylori strain NCTC11637

61.111

98.559

0.602
  recA Vibrio cholerae strain A1552

63.75

92.219

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

92.219

0.588
  recA Pseudomonas stutzeri DSM 10701

63.438

92.219

0.585
  recA Acinetobacter baylyi ADP1

59.064

98.559

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.656

93.948

0.579
  recA Acinetobacter baumannii D1279779

61.875

92.219

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

92.219

0.556

Multiple sequence alignment