Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EPA93_RS41770 Genome accession   NZ_CP035758
Coordinates   9732342..9733460 (+) Length   372 a.a.
NCBI ID   WP_277988702.1    Uniprot ID   -
Organism   Ktedonosporobacter rubrisoli strain SCAWS-G2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9727342..9738460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPA93_RS41745 (EPA93_41745) mtnP 9727696..9728571 (+) 876 WP_129893229.1 S-methyl-5'-thioadenosine phosphorylase -
  EPA93_RS41755 (EPA93_41755) dnaX 9728874..9731045 (+) 2172 WP_165423745.1 DNA polymerase III subunit gamma/tau -
  EPA93_RS41760 (EPA93_41760) - 9731062..9731358 (+) 297 WP_129893231.1 YbaB/EbfC family nucleoid-associated protein -
  EPA93_RS41765 (EPA93_41765) recR 9731363..9731974 (+) 612 WP_129893232.1 recombination mediator RecR -
  EPA93_RS41770 (EPA93_41770) recA 9732342..9733460 (+) 1119 WP_277988702.1 recombinase RecA Machinery gene
  EPA93_RS41775 (EPA93_41775) - 9733598..9735025 (-) 1428 WP_129893233.1 DUF4032 domain-containing protein -
  EPA93_RS41780 (EPA93_41780) - 9735212..9735973 (+) 762 WP_129893234.1 glucose 1-dehydrogenase -
  EPA93_RS41785 (EPA93_41785) - 9736370..9737746 (+) 1377 WP_129893235.1 cytochrome P450 -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39884.47 Da        Isoelectric Point: 4.7540

>NTDB_id=344267 EPA93_RS41770 WP_277988702.1 9732342..9733460(+) (recA) [Ktedonosporobacter rubrisoli strain SCAWS-G2]
MSKKEKVAADRSAATAGMSEREKAIDLALTQIERRFGKGAIMKLGEAAKVQVDAIPTGSIALDLALGIGGVPRGRITEIY
GPESSGKTTLCLHVIAAAQKAGGYAAFVDAEHALDPIYAARLGVDTGNLLISQPDTGEQALEIVDSLVRSNAIDVIVVDS
VAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGAISNSNCVVIFTNQLREKIGVMFGNPETTAGGKALKFYASVRLDI
RRTDSIKQGQDVVGNRTRVRVVKNKVAPPFKTAEFDIMYSEGISREGGLLDLGLEMGLVKKSGAWFTVGDIRLGQGRENA
KEFLRQNTDVAAAIDEQIRGNMMAFKAGEIEEVEEEEEEEPEVIAETLTEEV

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=344267 EPA93_RS41770 WP_277988702.1 9732342..9733460(+) (recA) [Ktedonosporobacter rubrisoli strain SCAWS-G2]
ATGAGTAAGAAGGAAAAAGTCGCTGCAGACCGCAGTGCAGCTACTGCTGGTATGAGCGAGCGTGAGAAAGCGATAGATCT
AGCGCTTACGCAGATCGAACGTCGCTTTGGCAAGGGCGCAATCATGAAGTTAGGAGAAGCGGCAAAGGTTCAGGTTGACG
CTATCCCAACTGGATCAATTGCTCTGGACCTGGCTCTGGGTATTGGAGGTGTGCCAAGGGGGCGCATAACGGAAATCTAT
GGCCCGGAGTCCTCTGGTAAGACAACCCTCTGCTTGCATGTCATTGCGGCTGCCCAGAAAGCCGGTGGTTATGCAGCCTT
TGTCGACGCAGAGCACGCGCTTGATCCTATCTATGCGGCTCGCCTGGGGGTTGATACGGGTAATCTTCTCATCTCCCAGC
CCGATACTGGTGAGCAGGCTCTAGAGATCGTTGACTCGCTCGTGCGTAGTAATGCTATCGATGTGATCGTCGTCGACTCT
GTAGCCGCGCTGGTTCCACGGGCCGAAATTGAGGGCGAGATGGGCGACTCGCATGTCGGTTTGCAGGCACGTCTGATGAG
CCAGGCGTTGCGTAAGCTCACGGGCGCGATCAGCAACTCTAATTGTGTTGTGATCTTTACTAACCAGCTTCGTGAGAAGA
TCGGCGTTATGTTTGGCAATCCTGAGACTACGGCTGGTGGTAAGGCCTTGAAGTTCTATGCTTCTGTGCGCCTGGATATT
CGTCGTACCGACTCTATTAAGCAGGGTCAGGATGTGGTTGGCAACCGTACCCGTGTGCGCGTGGTGAAGAATAAGGTGGC
ACCTCCCTTTAAGACTGCCGAGTTCGATATCATGTACAGCGAGGGCATTTCGCGCGAGGGCGGTTTGCTTGATCTTGGTC
TGGAAATGGGGCTTGTTAAGAAGAGTGGGGCCTGGTTTACGGTCGGCGATATTCGTCTTGGCCAGGGCCGCGAGAATGCT
AAAGAGTTCCTTCGCCAGAATACCGATGTCGCGGCCGCCATTGATGAGCAGATTCGTGGCAATATGATGGCCTTTAAGGC
AGGCGAGATAGAGGAAGTTGAGGAGGAAGAAGAGGAAGAGCCAGAAGTTATCGCCGAGACGCTAACCGAAGAGGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.012

86.559

0.589
  recA Neisseria gonorrhoeae MS11

62.029

92.742

0.575
  recA Neisseria gonorrhoeae strain FA1090

62.029

92.742

0.575
  recA Neisseria gonorrhoeae MS11

62.029

92.742

0.575
  recA Pseudomonas stutzeri DSM 10701

65.138

87.903

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.877

91.667

0.567
  recA Ralstonia pseudosolanacearum GMI1000

64.329

88.172

0.567
  recA Glaesserella parasuis strain SC1401

59.659

94.624

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

58.475

95.161

0.556
  recA Acinetobacter baumannii D1279779

59.366

93.28

0.554
  recA Streptococcus mitis SK321

58.028

95.43

0.554
  recA Streptococcus pneumoniae TIGR4

57.263

96.237

0.551
  recA Streptococcus pneumoniae D39

57.263

96.237

0.551
  recA Streptococcus pneumoniae R6

57.263

96.237

0.551
  recA Streptococcus pneumoniae Rx1

57.263

96.237

0.551
  recA Streptococcus mitis NCTC 12261

57.746

95.43

0.551
  recA Acinetobacter baylyi ADP1

59.302

92.473

0.548
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.636

85.753

0.546
  recA Vibrio cholerae strain A1552

63.636

85.753

0.546
  recA Helicobacter pylori 26695

62.928

86.29

0.543
  recA Helicobacter pylori strain NCTC11637

62.928

86.29

0.543
  recA Streptococcus mutans UA159

58.14

92.473

0.538
  recA Lactococcus lactis subsp. cremoris KW2

58.017

92.204

0.535
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.235

91.398

0.532
  recA Streptococcus pyogenes NZ131

60.494

87.097

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

87.634

0.522

Multiple sequence alignment