Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EVJ50_RS07955 Genome accession   NZ_CP035632
Coordinates   1628630..1629832 (-) Length   400 a.a.
NCBI ID   WP_150883340.1    Uniprot ID   -
Organism   Synechococcus sp. RSCCF101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1623630..1634832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVJ50_RS07930 (EVJ50_07930) crtD 1623856..1625412 (+) 1557 WP_150883330.1 C-3',4' desaturase CrtD -
  EVJ50_RS07935 (EVJ50_07935) - 1625420..1626313 (-) 894 WP_150883332.1 prephenate/arogenate dehydrogenase -
  EVJ50_RS07940 (EVJ50_07940) - 1626356..1627816 (+) 1461 WP_150883334.1 helicase -
  EVJ50_RS07945 (EVJ50_07945) - 1627901..1628140 (+) 240 WP_150883336.1 DUF2839 domain-containing protein -
  EVJ50_RS07950 (EVJ50_07950) - 1628250..1628615 (+) 366 WP_150883338.1 DUF1815 family protein -
  EVJ50_RS07955 (EVJ50_07955) recA 1628630..1629832 (-) 1203 WP_150883340.1 recombinase RecA Machinery gene
  EVJ50_RS07960 (EVJ50_07960) - 1629972..1630733 (-) 762 WP_150883342.1 HAD family hydrolase -
  EVJ50_RS07970 (EVJ50_07970) - 1630933..1632633 (-) 1701 WP_150883344.1 AAA family ATPase -
  EVJ50_RS07975 (EVJ50_07975) - 1632663..1633736 (-) 1074 WP_191964720.1 LdpA C-terminal domain-containing domain -
  EVJ50_RS07980 (EVJ50_07980) ndhN 1633729..1634184 (-) 456 WP_150883346.1 NAD(P)H-quinone oxidoreductase subunit N -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 42126.82 Da        Isoelectric Point: 8.4158

>NTDB_id=343269 EVJ50_RS07955 WP_150883340.1 1628630..1629832(-) (recA) [Synechococcus sp. RSCCF101]
MPVELKGSAARAAANGRQQDAQQAERDRALSSVLGQIERNFGKGSIMRLGDASRMRVETISSGALTLDLALGGGYPKGRV
VEIYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMALEIVDQLVRSGAVDIV
VVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGSPETTTGGNALKFYASV
RLDIRRIQTLKRATEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYNGDNIGQG
RDNTIGWLEQNSEPAQTIETEVRRRLTEGADVRSNSMKPLAAAAREAAASTKRPDAPGTAGADPGAAAPASPAAAVTGGR

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=343269 EVJ50_RS07955 WP_150883340.1 1628630..1629832(-) (recA) [Synechococcus sp. RSCCF101]
ATGCCAGTCGAACTCAAGGGCAGTGCCGCCCGCGCCGCCGCCAACGGCCGCCAGCAGGATGCTCAGCAGGCGGAGCGGGA
CCGGGCCCTCTCCTCCGTCCTCGGCCAGATCGAGCGCAACTTCGGCAAGGGCTCGATCATGCGGCTCGGGGATGCCTCCC
GCATGCGGGTGGAGACCATCTCCTCCGGTGCCCTGACTCTCGATCTCGCCCTGGGCGGCGGCTATCCCAAGGGCAGGGTC
GTGGAGATCTACGGGCCGGAGAGTTCAGGTAAGACCACCCTCACCCTGCATGCGATCGCCGAGGTGCAGCGCCGGGGGGG
GGTGGCGGCCTTCGTCGATGCCGAACACGCCCTGGATCCGGTCTACGCCGCGGCCCTCGGGGTCGACATCGAGAACCTGC
TGGTGTCCCAGCCGGACACCGGCGAGATGGCGCTGGAGATCGTGGACCAGCTGGTGCGTTCCGGTGCCGTGGACATCGTG
GTGGTGGATTCGGTGGCCGCCCTCACGCCCCGGGCGGAGATCGAGGGGGAGATGGGTGATCTCGCCGTGGGCAGCCAGGC
CCGCCTGATGAGTCAGGCCATGCGCAAGATCACCGGCAACATCGGCAAGTCCGGCTGCACGGTGATCTTCCTCAACCAGC
TGCGGCTCAAGATCGGCGTCACCTACGGCAGCCCCGAAACCACGACGGGAGGCAACGCGCTCAAGTTCTATGCCTCGGTG
CGGCTCGACATCCGTCGCATTCAGACCCTGAAACGGGCCACCGAGGAATACGGCATCCGCGCCAAGGTGAAGGTGGCCAA
GAACAAGGTGGCGCCGCCCTTCCGAATCGCGGAGTTCGACATCCTCTTCGGACGCGGCATCAGCACGCTCGGATGCCTGC
TCGATCTGGCCGAGGAGACGGGGGTGGTGATCCGCAAGGGCGCCTGGTACAGCTACAACGGCGACAACATCGGCCAGGGT
CGCGACAACACGATCGGCTGGCTGGAGCAGAACAGCGAGCCGGCCCAGACGATCGAGACGGAAGTACGCCGCCGTCTGAC
CGAAGGCGCCGATGTGCGATCCAACTCGATGAAACCGCTGGCGGCCGCGGCGCGGGAGGCCGCGGCCTCAACGAAGCGGC
CGGACGCTCCGGGAACTGCTGGAGCCGATCCGGGCGCTGCTGCTCCGGCCAGCCCGGCGGCCGCAGTGACCGGGGGCCGC
TGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(28-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.634

82

0.53
  recA Ralstonia pseudosolanacearum GMI1000

63.363

83.25

0.527
  recA Pseudomonas stutzeri DSM 10701

64.596

80.5

0.52
  recA Acinetobacter baumannii D1279779

64.596

80.5

0.52
  recA Vibrio cholerae strain A1552

62.733

80.5

0.505
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

80.5

0.505
  recA Neisseria gonorrhoeae MS11

60.241

83

0.5
  recA Neisseria gonorrhoeae MS11

60.241

83

0.5
  recA Neisseria gonorrhoeae strain FA1090

60.241

83

0.5
  recA Glaesserella parasuis strain SC1401

61.61

80.75

0.498
  recA Helicobacter pylori strain NCTC11637

58.284

84.5

0.492
  recA Helicobacter pylori 26695

58.284

84.5

0.492
  recA Bacillus subtilis subsp. subtilis str. 168

60.681

80.75

0.49
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.574

82.25

0.49
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

80.75

0.485
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.813

80.25

0.48
  recA Streptococcus pneumoniae R6

56.845

84

0.477
  recA Streptococcus pneumoniae Rx1

56.845

84

0.477
  recA Streptococcus pneumoniae D39

56.845

84

0.477
  recA Streptococcus pneumoniae TIGR4

56.845

84

0.477
  recA Lactococcus lactis subsp. cremoris KW2

58.462

81.25

0.475
  recA Streptococcus mitis NCTC 12261

57.622

82

0.473
  recA Streptococcus mitis SK321

57.622

82

0.473
  recA Streptococcus mutans UA159

58.025

81

0.47
  recA Streptococcus pyogenes NZ131

56.269

81.75

0.46
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.481

81

0.457

Multiple sequence alignment