Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ET475_RS12925 Genome accession   NZ_CP035494
Coordinates   2795056..2796108 (+) Length   350 a.a.
NCBI ID   WP_129390942.1    Uniprot ID   -
Organism   Microbacterium protaetiae strain DFW100M-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2790056..2801108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET475_RS12900 (ET475_12900) - 2790377..2793055 (+) 2679 WP_129390926.1 DNA translocase FtsK -
  ET475_RS12905 (ET475_12905) pgsA 2793074..2793643 (+) 570 WP_129390929.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ET475_RS12910 (ET475_12910) - 2793640..2794125 (+) 486 WP_129390932.1 CinA family protein -
  ET475_RS12915 (ET475_12915) - 2794273..2794581 (+) 309 WP_129390935.1 helix-turn-helix transcriptional regulator -
  ET475_RS12920 (ET475_12920) - 2794585..2794809 (+) 225 WP_129390938.1 DUF3046 domain-containing protein -
  ET475_RS12925 (ET475_12925) recA 2795056..2796108 (+) 1053 WP_129390942.1 recombinase RecA Machinery gene
  ET475_RS12930 (ET475_12930) - 2796111..2796722 (+) 612 WP_129390944.1 regulatory protein RecX -
  ET475_RS12935 (ET475_12935) - 2796727..2797677 (-) 951 WP_129390947.1 1-phosphofructokinase family hexose kinase -
  ET475_RS12940 (ET475_12940) - 2797717..2799933 (-) 2217 WP_165310918.1 biotin/lipoyl-binding protein -
  ET475_RS17890 - 2799926..2800843 (-) 918 WP_165310920.1 hypothetical protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37542.02 Da        Isoelectric Point: 5.8377

>NTDB_id=342837 ET475_RS12925 WP_129390942.1 2795056..2796108(+) (recA) [Microbacterium protaetiae strain DFW100M-13]
MPTPADREKALESALAQIDRQFGKGSVMRLGSDERAPVEVIPTGSIALDVALGVGGLPRGRIIEIYGPESSGKTTLTLHA
IANVQKAGGIAAFVDAEHALDPDYAKKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVEHGIVKKSGAWYTYEGEQLGQGKENARNFLIKNADMAAEI
ESKIKTKLGIGVPKAVEEIAEDELAQRRPA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=342837 ET475_RS12925 WP_129390942.1 2795056..2796108(+) (recA) [Microbacterium protaetiae strain DFW100M-13]
ATGCCCACACCAGCAGACCGCGAAAAGGCCCTGGAATCGGCCCTCGCACAGATCGACCGGCAGTTCGGAAAGGGCTCGGT
CATGCGACTGGGCAGCGACGAGCGCGCCCCGGTCGAGGTCATCCCCACCGGCTCGATCGCCCTCGACGTCGCCCTCGGCG
TGGGCGGACTTCCCCGCGGGCGCATCATCGAGATCTACGGCCCCGAGTCGTCGGGTAAGACGACGCTCACGCTGCACGCG
ATCGCCAACGTGCAGAAGGCGGGCGGCATCGCCGCGTTCGTCGACGCCGAGCACGCGCTCGATCCCGACTACGCGAAGAA
GCTCGGCGTCGACATCGACCAGCTGCTCGTGTCTCAGCCCGACACCGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGA
TCCGCTCGGGCGCCATCGACCTGGTCGTGATCGACTCCGTGGCCGCCCTTGTGCCGCGCGCCGAGATCGAGGGAGAGATG
GGTGACTCGCATGTGGGCCTGCAGGCCCGGCTGATGTCGCAGGCGCTGCGCAAGCTGACCGGTGGGCTGAACCAGACCAA
GACCACCGCGATCTTCATCAACCAGTTGCGTGAGAAGATCGGCGTGTTCTTCGGCTCGCCCGAGACCACCGCGGGCGGCA
AAGCGTTGAAGTTCTACGCGTCGGTGCGCCTGGACATCCGTCGCATCGAGACGCTGAAAGACGGTTCCGAGGCAGTCGGA
AACCGCACCCGTGTGAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGAAT
CGGCATCTCGCGCGAGGGCAGCCTCATCGACTTCGGCGTCGAGCACGGCATCGTCAAGAAGTCCGGCGCCTGGTACACCT
ACGAGGGTGAACAGCTCGGTCAGGGTAAAGAGAACGCGCGCAACTTCCTGATCAAGAACGCCGACATGGCGGCAGAGATC
GAGAGCAAGATCAAGACGAAGCTCGGCATCGGTGTTCCCAAGGCAGTCGAGGAGATCGCCGAAGACGAGCTGGCGCAGCG
CCGGCCCGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

65.217

98.571

0.643
  recA Neisseria gonorrhoeae strain FA1090

65.217

98.571

0.643
  recA Neisseria gonorrhoeae MS11

65.217

98.571

0.643
  recA Ralstonia pseudosolanacearum GMI1000

67.988

93.714

0.637
  recA Acinetobacter baylyi ADP1

63.953

98.286

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

66.871

93.143

0.623
  recA Acinetobacter baumannii D1279779

67.492

92.286

0.623
  recA Pseudomonas stutzeri DSM 10701

67.183

92.286

0.62
  recA Latilactobacillus sakei subsp. sakei 23K

63.127

96.857

0.611
  recA Streptococcus mitis SK321

61.272

98.857

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.635

92.286

0.606
  recA Vibrio cholerae strain A1552

65.635

92.286

0.606
  recA Lactococcus lactis subsp. cremoris KW2

64.242

94.286

0.606
  recA Glaesserella parasuis strain SC1401

59.605

100

0.603
  recA Streptococcus mitis NCTC 12261

60.983

98.857

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

93.143

0.594
  recA Helicobacter pylori strain NCTC11637

63.03

94.286

0.594
  recA Helicobacter pylori 26695

63.03

94.286

0.594
  recA Streptococcus pneumoniae Rx1

63.03

94.286

0.594
  recA Streptococcus pneumoniae D39

63.03

94.286

0.594
  recA Streptococcus pneumoniae R6

63.03

94.286

0.594
  recA Streptococcus pneumoniae TIGR4

63.03

94.286

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

94

0.586
  recA Streptococcus mutans UA159

62.006

94

0.583
  recA Streptococcus pyogenes NZ131

62.195

93.714

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

92.857

0.557

Multiple sequence alignment