Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EUBREC_RS10050 Genome accession   NC_012781
Coordinates   2081832..2082884 (-) Length   350 a.a.
NCBI ID   WP_012743062.1    Uniprot ID   A0A173SC84
Organism   Agathobacter rectalis ATCC 33656     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2076832..2087884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUBREC_RS10030 (EUBREC_2224) - 2077397..2077936 (-) 540 WP_012743058.1 NUDIX domain-containing protein -
  EUBREC_RS10035 (EUBREC_2225) - 2077986..2079203 (-) 1218 WP_041254116.1 iron-containing alcohol dehydrogenase -
  EUBREC_RS10040 (EUBREC_2226) rny 2079574..2081121 (-) 1548 WP_012743060.1 ribonuclease Y -
  EUBREC_RS10045 (EUBREC_2227) - 2081204..2081812 (-) 609 WP_012743061.1 regulatory protein RecX -
  EUBREC_RS10050 (EUBREC_2228) recA 2081832..2082884 (-) 1053 WP_012743062.1 recombinase RecA Machinery gene
  EUBREC_RS10055 (EUBREC_2229) - 2083164..2084756 (-) 1593 WP_012743063.1 peptide chain release factor 3 -
  EUBREC_RS10060 (EUBREC_2230) - 2084835..2085461 (-) 627 WP_012743064.1 SpoIIIAH-like family protein -
  EUBREC_RS10065 (EUBREC_2231) - 2085464..2086012 (-) 549 WP_155505198.1 stage III sporulation protein AG -
  EUBREC_RS10070 (EUBREC_2232) - 2085954..2086205 (-) 252 WP_012743066.1 stage III sporulation protein AF -
  EUBREC_RS10075 (EUBREC_2233) - 2086212..2087360 (-) 1149 WP_012743067.1 stage III sporulation protein AE -
  EUBREC_RS10080 (EUBREC_2234) - 2087357..2087734 (-) 378 WP_012743068.1 SpoIIIAC/SpoIIIAD family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37877.97 Da        Isoelectric Point: 4.7056

>NTDB_id=34265 EUBREC_RS10050 WP_012743062.1 2081832..2082884(-) (recA) [Agathobacter rectalis ATCC 33656]
MAKEDKLKALDAAIAQIEKQYGKGSVMKLGDNSANMNVETVPTGSLSLDIALGLGGLPKGRIIEVYGPESSGKTTVALHC
VAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQPDCGEQALEITETMVRSGAVDIVVVDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRTESLKQGGEIVG
NHVRVKVVKNKIAPPFREAEFDIMFGQGISREGDVLDLAVNAGIVNKSGAWYAYEGDKIGQGRENAKTYIHENPAFFDML
EAKVRDFYFTQPEDEDAAVQEDSEKPEAEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=34265 EUBREC_RS10050 WP_012743062.1 2081832..2082884(-) (recA) [Agathobacter rectalis ATCC 33656]
ATGGCAAAGGAAGATAAATTAAAAGCATTAGACGCTGCCATTGCGCAGATTGAGAAACAATACGGAAAGGGCTCTGTCAT
GAAGCTTGGTGACAATTCAGCCAATATGAATGTAGAGACAGTACCTACAGGCTCATTAAGCCTTGATATTGCATTAGGAC
TCGGAGGACTTCCAAAGGGCAGGATTATTGAGGTGTACGGACCGGAGTCATCAGGTAAGACAACGGTTGCACTCCACTGT
GTTGCAGAGGTACAGAAGCGAGGCGGCATCGCAGGCTTTATAGATGCAGAGCATGCGCTTGACCCTGTATATGCCAGAAA
TATAGGTGTTGATATTGACAATCTCTATATTTCACAGCCGGACTGCGGTGAGCAGGCACTTGAGATAACAGAGACCATGG
TACGTTCCGGCGCTGTGGATATCGTGGTTGTCGATTCAGTAGCGGCACTCGTACCAAAGGCCGAGATTGACGGAGATATG
GGTGATTCCCATGTGGGTCTTCAGGCGAGACTTATGAGCCAGGCGCTCCGTAAGCTCACGGCAGTTATCAGTAAGTCAAA
TTGTATCGTTATATTCATCAATCAGCTTCGTGAGAAGGTAGGTGTGATGTTTGGAAATCCTGAGACTACCACAGGTGGAA
GGGCATTAAAGTTCTATTCATCAGTGCGTCTTGATGTCAGAAGAACTGAGTCACTCAAGCAGGGCGGTGAGATAGTCGGC
AACCATGTCCGCGTAAAGGTTGTTAAGAATAAAATAGCTCCTCCTTTCAGGGAGGCAGAGTTTGATATCATGTTTGGACA
GGGTATCTCAAGAGAAGGAGATGTGCTTGATCTTGCAGTAAATGCAGGCATTGTCAACAAATCCGGTGCATGGTACGCGT
ACGAGGGAGACAAGATAGGACAGGGTCGTGAGAATGCAAAGACTTATATTCATGAGAATCCGGCATTTTTTGATATGCTT
GAGGCAAAGGTAAGGGATTTTTACTTTACACAGCCTGAGGACGAAGATGCTGCAGTACAGGAAGACTCTGAAAAGCCTGA
AGCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A173SC84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.444

92.571

0.643
  recA Acinetobacter baylyi ADP1

63.401

99.143

0.629
  recA Acinetobacter baumannii D1279779

63.768

98.571

0.629
  recA Neisseria gonorrhoeae strain FA1090

63.188

98.571

0.623
  recA Neisseria gonorrhoeae MS11

63.188

98.571

0.623
  recA Neisseria gonorrhoeae MS11

63.188

98.571

0.623
  recA Glaesserella parasuis strain SC1401

63.824

97.143

0.62
  recA Streptococcus mutans UA159

61.823

100

0.62
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.257

94.571

0.617
  recA Vibrio cholerae strain A1552

65.257

94.571

0.617
  recA Latilactobacillus sakei subsp. sakei 23K

62.319

98.571

0.614
  recA Pseudomonas stutzeri DSM 10701

62.059

97.143

0.603
  recA Streptococcus pneumoniae D39

64.308

92.857

0.597
  recA Streptococcus pneumoniae R6

64.308

92.857

0.597
  recA Streptococcus pneumoniae TIGR4

64.308

92.857

0.597
  recA Streptococcus pneumoniae Rx1

64.308

92.857

0.597
  recA Streptococcus mitis NCTC 12261

64.907

92

0.597
  recA Streptococcus pyogenes NZ131

64.11

93.143

0.597
  recA Streptococcus mitis SK321

64.596

92

0.594
  recA Lactococcus lactis subsp. cremoris KW2

64.286

92

0.591
  recA Helicobacter pylori 26695

63.272

92.571

0.586
  recA Helicobacter pylori strain NCTC11637

62.963

92.571

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.963

92.571

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

93.714

0.583
  recA Ralstonia pseudosolanacearum GMI1000

64.241

90.286

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

92.571

0.557

Multiple sequence alignment