Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   SALIVB_RS11050 Genome accession   NC_015760
Coordinates   1878533..1879282 (+) Length   249 a.a.
NCBI ID   WP_013991120.1    Uniprot ID   A0ABT7LRP2
Organism   Streptococcus salivarius CCHSS3     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1873533..1884282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS08575 (SALIVB_1787) - 1873933..1874919 (-) 987 WP_013991115.1 IS30 family transposase -
  SALIVB_RS08580 (SALIVB_1788) - 1875137..1875502 (-) 366 WP_013991116.1 hypothetical protein -
  SALIVB_RS08585 (SALIVB_1789) - 1875720..1876016 (-) 297 WP_013991117.1 bacteriocin immunity protein -
  SALIVB_RS08590 (SALIVB_1791) - 1876486..1876878 (-) 393 WP_003094909.1 hypothetical protein -
  SALIVB_RS10815 - 1876887..1876952 (-) 66 Protein_1669 ComC/BlpC family leader-containing pheromone/bacteriocin -
  SALIVB_RS08595 (SALIVB_1793) comE/blpR 1877211..1877951 (+) 741 WP_013991119.1 response regulator transcription factor Regulator
  SALIVB_RS11050 (SALIVB_1794) comD/comD3 1878533..1879282 (+) 750 WP_013991120.1 sensor histidine kinase Regulator
  SALIVB_RS11140 (SALIVB_1795) - 1879369..1879770 (-) 402 WP_013991121.1 hypothetical protein -
  SALIVB_RS10905 (SALIVB_1796) - 1880117..1880284 (-) 168 WP_013991122.1 hypothetical protein -
  SALIVB_RS08615 (SALIVB_1799) - 1880773..1881003 (-) 231 WP_013991125.1 Blp family class II bacteriocin -
  SALIVB_RS08620 (SALIVB_1800) - 1881164..1882909 (-) 1746 WP_013991126.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28636.85 Da        Isoelectric Point: 5.1411

>NTDB_id=34265 SALIVB_RS11050 WP_013991120.1 1878533..1879282(+) (comD/comD3) [Streptococcus salivarius CCHSS3]
MVIYLVLFFIMLIFLDRNIRATIQSQLDFQKDIQLSHLTNYNKQIENLYQSVRSFRHDYANILTTLKLGIDQNDMAIVKE
VYDSVLKDSDKHLKSKTFDLTRLINIEDNTIKSLLAAKFLEAEENNIDISLDIPETIKLEGMEMVDFITVISIFLDNAME
ASIQSDIPKMHIGYFNHGNKQIFIVQNSTQEEFIPISSLFERGVSSKGDHRGIGLANVRNILDNYQNISLKTESMTFAFT
QELNISKKA

Nucleotide


Download         Length: 750 bp        

>NTDB_id=34265 SALIVB_RS11050 WP_013991120.1 1878533..1879282(+) (comD/comD3) [Streptococcus salivarius CCHSS3]
GTGGTTATTTATCTAGTCTTGTTCTTTATCATGCTTATCTTCTTAGATAGAAATATCCGAGCAACAATACAAAGTCAGTT
GGACTTTCAAAAAGATATTCAACTATCGCATCTTACGAATTATAACAAACAGATTGAAAACCTCTATCAGTCGGTTCGAA
GTTTTCGTCATGATTATGCCAATATTTTAACAACACTCAAACTTGGTATCGATCAAAATGATATGGCTATTGTAAAAGAA
GTCTACGACTCAGTTCTAAAAGATTCCGATAAGCATTTAAAATCGAAAACATTTGATTTAACTCGCTTAATAAACATAGA
AGATAACACTATCAAAAGCCTACTTGCAGCTAAGTTCCTAGAGGCAGAAGAAAATAACATTGATATCTCCTTAGATATTC
CTGAAACTATCAAACTCGAGGGTATGGAGATGGTCGATTTTATTACTGTAATATCTATCTTTCTAGACAATGCGATGGAA
GCATCGATTCAGTCTGACATACCAAAAATGCATATTGGCTACTTCAATCATGGTAATAAGCAAATCTTTATTGTCCAAAA
CTCAACCCAGGAAGAATTTATTCCTATCTCATCACTTTTTGAGAGAGGTGTCTCCAGTAAAGGGGATCATCGCGGTATAG
GTTTGGCCAACGTTAGGAATATATTAGACAACTATCAAAATATTTCTTTAAAAACTGAAAGTATGACTTTTGCATTTACA
CAGGAACTTAATATATCGAAAAAAGCTTGA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(142-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

42.798

97.59

0.418
  comD/comD2 Streptococcus equinus JB1

40.329

97.59

0.394
  comD/blpH Streptococcus mutans UA159

39.592

98.394

0.39
  comD/comD1 Streptococcus equinus JB1

39.394

92.771

0.365

Multiple sequence alignment