Detailed information NTG0342210

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BACIH_RS01275
• Genome accession: NZ_CP044360
• Coordinates: 227213..228334 (+)
• Length: 373 a.a.
• NCBI ID: WP_011996281.1
• Uniprot ID: A7Z131
• Organism: Bacillus amyloliquefaciens strain V167
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 222213..233334

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BACIH_RS01255 (BACIH_0234)	-	222521..223516 (-)	996	WP_007409036.1	DUF5105 domain-containing protein	-
BACIH_RS01260 (BACIH_0236)	-	223643..225044 (+)	1402	Protein_235	YcdB/YcdC domain-containing protein	-
BACIH_RS01265 (BACIH_0237)	-	225245..226603 (+)	1359	WP_023356694.1	YcdB/YcdC domain-containing protein	-
BACIH_RS01270 (BACIH_0238)	-	226600..227103 (-)	504	WP_011996280.1	M15 family metallopeptidase	-
BACIH_RS01275 (BACIH_0239)	rapF	227213..228334 (+)	1122	WP_011996281.1	Rap family tetratricopeptide repeat protein	Regulator
BACIH_RS01285 (BACIH_0240)	-	228449..229228 (+)	780	WP_011996282.1	glucose 1-dehydrogenase	-
BACIH_RS01290 (BACIH_0241)	-	229312..230991 (+)	1680	WP_011996283.1	alpha-glucosidase	-
BACIH_RS01295 (BACIH_0242)	-	231177..232136 (+)	960	WP_011996284.1	metal ABC transporter substrate-binding protein	-
BACIH_RS01300 (BACIH_0243)	-	232191..232886 (+)	696	WP_011996285.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44317.53 Da
• Isoelectric Point: 5.0806

>NTDB_id=342210 BACIH_RS01275 WP_011996281.1 227213..228334(+) (rapF) [Bacillus amyloliquefaciens strain V167]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAFYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=342210 BACIH_RS01275 WP_011996281.1 227213..228334(+) (rapF) [Bacillus amyloliquefaciens strain V167]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTTTTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

3D structure

• AlphaFold DB: A7Z131

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.054	99.732	0.399