Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EKL02_RS05160 Genome accession   NZ_CP035311
Coordinates   1145569..1146669 (+) Length   366 a.a.
NCBI ID   WP_128901049.1    Uniprot ID   A0A410UQM1
Organism   Janthinobacterium sp. 17J80-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140569..1151669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKL02_RS05140 (EKL02_05140) - 1141097..1141981 (-) 885 WP_128901045.1 proteasome-type protease -
  EKL02_RS05145 (EKL02_05145) - 1142076..1142873 (-) 798 WP_128901046.1 transglutaminase family protein -
  EKL02_RS05150 (EKL02_05150) - 1142903..1143835 (-) 933 WP_128901047.1 alpha-E domain-containing protein -
  EKL02_RS05155 (EKL02_05155) - 1143837..1145252 (-) 1416 WP_128901048.1 circularly permuted type 2 ATP-grasp protein -
  EKL02_RS05160 (EKL02_05160) recA 1145569..1146669 (+) 1101 WP_128901049.1 recombinase RecA Machinery gene
  EKL02_RS05165 (EKL02_05165) recX 1146742..1147197 (+) 456 WP_128901050.1 recombination regulator RecX -
  EKL02_RS05170 (EKL02_05170) sucC 1147598..1148764 (+) 1167 WP_128901051.1 ADP-forming succinate--CoA ligase subunit beta -
  EKL02_RS05175 (EKL02_05175) sucD 1148777..1149658 (+) 882 WP_128901052.1 succinate--CoA ligase subunit alpha -
  EKL02_RS05180 (EKL02_05180) - 1149857..1150675 (+) 819 WP_128901053.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39074.72 Da        Isoelectric Point: 5.3771

>NTDB_id=339265 EKL02_RS05160 WP_128901049.1 1145569..1146669(+) (recA) [Janthinobacterium sp. 17J80-10]
MDDKKYAPNLDKSKALAAALAQIEKQFGKGSVMRMEDGAVVEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQAIAEMQKIGGTCAFIDAEHALDVTYAQKLGVNLSDLLISQPDTGEQALEITDALVRSGSVDLIVVDSVAALTPRA
EIEGEMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKS
GDEVIGNETKVKVVKNKVAPPFKEAHFDIMYGEGTSREGEIIDLGVEAKIVDKSGAWYSYNGEKIGQGKDNARNFLKENP
ALAYEIENKVRAALGVPLLPPVKGAEPAPKKAGSKDSKDKESKEVE

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=339265 EKL02_RS05160 WP_128901049.1 1145569..1146669(+) (recA) [Janthinobacterium sp. 17J80-10]
ATGGACGACAAAAAGTACGCCCCCAATCTGGACAAGAGCAAAGCTCTGGCTGCCGCCCTGGCGCAAATTGAAAAGCAGTT
CGGCAAGGGTTCCGTGATGCGCATGGAAGACGGCGCAGTGGTCGAGGAAGTGCAAGTGGTCTCGACCGGTTCGCTCGGTC
TGGATATTGCCTTGGGCGTTGGCGGTTTGCCGCGCGGCCGCGTGGTGGAAATCTATGGCCCGGAATCTTCCGGCAAGACG
ACGCTGACGCTGCAAGCTATTGCTGAGATGCAAAAAATTGGTGGCACCTGCGCCTTTATCGATGCCGAACATGCGCTCGA
CGTGACGTATGCCCAAAAGCTGGGCGTCAACCTGTCGGATTTGCTGATCTCGCAACCGGATACTGGCGAGCAAGCTCTGG
AAATCACCGATGCGCTGGTGCGTTCGGGCAGCGTGGACCTGATCGTGGTCGACTCGGTGGCGGCCCTGACGCCGCGCGCC
GAAATCGAAGGCGAAATGGGCGATTCGCTGCCGGGCCTGCAGGCGCGCCTGATGTCGCAAGCCTTGCGCAAGCTGACCGG
ATCGATCAACCGCACCAATACCCTGGTCATTTTCATTAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGTAGCCCGG
AGACCACCACCGGTGGCAATGCGCTGAAATTCTATGCCTCGGTACGCCTGGATATCCGCCGGATCGGCTCGGTCAAGTCG
GGCGATGAAGTGATCGGCAATGAAACCAAGGTCAAGGTTGTCAAGAACAAGGTGGCCCCGCCGTTCAAGGAAGCGCATTT
CGACATCATGTATGGCGAAGGCACATCGCGCGAAGGCGAGATCATCGATCTGGGCGTGGAAGCCAAGATTGTCGACAAGT
CGGGCGCCTGGTACAGCTACAATGGCGAAAAGATTGGCCAGGGCAAGGACAATGCACGCAATTTCTTGAAAGAAAATCCG
GCGCTGGCGTACGAGATTGAAAACAAGGTGCGCGCTGCCTTGGGCGTGCCGCTGCTGCCACCGGTCAAGGGTGCTGAACC
AGCTCCCAAGAAAGCTGGCAGCAAGGACAGCAAGGACAAGGAAAGCAAGGAAGTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410UQM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.046

95.082

0.79
  recA Acinetobacter baylyi ADP1

72.754

91.257

0.664
  recA Neisseria gonorrhoeae MS11

73.78

89.617

0.661
  recA Neisseria gonorrhoeae MS11

73.78

89.617

0.661
  recA Neisseria gonorrhoeae strain FA1090

73.78

89.617

0.661
  recA Acinetobacter baumannii D1279779

73.765

88.525

0.653
  recA Pseudomonas stutzeri DSM 10701

73.765

88.525

0.653
  recA Vibrio cholerae strain A1552

72.171

89.344

0.645
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.171

89.344

0.645
  recA Glaesserella parasuis strain SC1401

72.136

88.251

0.637
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.267

90.984

0.612
  recA Helicobacter pylori 26695

67.178

89.071

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

89.344

0.596
  recA Helicobacter pylori strain NCTC11637

66.871

89.071

0.596
  recA Lactococcus lactis subsp. cremoris KW2

64.012

92.623

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

89.071

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

64.545

90.164

0.582
  recA Streptococcus mitis NCTC 12261

59.718

96.995

0.579
  recA Streptococcus mitis SK321

60.58

94.262

0.571
  recA Streptococcus pyogenes NZ131

62.918

89.891

0.566
  recA Streptococcus mutans UA159

62.727

90.164

0.566
  recA Streptococcus pneumoniae TIGR4

62.121

90.164

0.56
  recA Streptococcus pneumoniae D39

62.121

90.164

0.56
  recA Streptococcus pneumoniae Rx1

62.121

90.164

0.56
  recA Streptococcus pneumoniae R6

62.121

90.164

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.963

89.071

0.552

Multiple sequence alignment