Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VC395_RS02935 Genome accession   NC_012582
Coordinates   596899..597963 (+) Length   354 a.a.
NCBI ID   WP_000344156.1    Uniprot ID   A5F9B5
Organism   Vibrio cholerae O395     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 591899..602963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC395_RS02910 (VC395_0555) cysP 592161..593162 (+) 1002 WP_001079839.1 thiosulfate ABC transporter substrate-binding protein CysP -
  VC395_RS02915 (VC395_0556) cysT 593239..594090 (+) 852 WP_000531809.1 sulfate/thiosulfate ABC transporter permease CysT -
  VC395_RS02920 (VC395_0557) cysW 594102..594965 (+) 864 WP_000951359.1 sulfate ABC transporter permease subunit CysW -
  VC395_RS02925 (VC395_0558) - 594962..596092 (+) 1131 WP_000027778.1 sulfate/molybdate ABC transporter ATP-binding protein -
  VC395_RS02930 (VC395_0559) pncC 596259..596765 (+) 507 WP_000853809.1 nicotinamide-nucleotide amidase -
  VC395_RS02935 (VC395_0560) recA 596899..597963 (+) 1065 WP_000344156.1 recombinase RecA Machinery gene
  VC395_RS02940 (VC395_0561) recX 598096..598554 (+) 459 WP_000006850.1 recombination regulator RecX -
  VC395_RS02945 (VC395_0562) alaS 598727..601309 (+) 2583 WP_000481018.1 alanine--tRNA ligase -
  VC395_RS02950 (VC395_0564) - 601513..602700 (+) 1188 WP_001912545.1 aspartate kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38207.84 Da        Isoelectric Point: 5.0766

>NTDB_id=33914 VC395_RS02935 WP_000344156.1 596899..597963(+) (recA) [Vibrio cholerae O395]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPEIAKTLDK
KLREMLLNPENMQLTGETASAADDVEFGAVPEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=33914 VC395_RS02935 WP_000344156.1 596899..597963(+) (recA) [Vibrio cholerae O395]
ATGGACGAGAATAAACAGAAGGCACTTGCGGCCGCCCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCCATCATGCG
CTTAGGCGACAACCGCGCGATGGATGTAGAAACCATTTCGACCGGTTCTCTGTCTCTGGATATCGCGTTGGGTGCTGGTG
GCCTACCAATGGGACGTATCGTTGAGATCTTCGGCCCTGAATCTTCGGGTAAAACGACACTGACTCTGGAACTGATTGCT
GCTGCGCAACGTGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGTTGGATCCGGTTTATGCCAAGAAATTGGG
CGTGAATATCGATGAGCTGCTGGTTTCTCAGCCTGATACCGGCGAGCAAGCACTGGAAATTTGTGATGCACTGGCTCGCT
CTGGTGCGGTAGATGTGATTGTTGTTGACTCAGTCGCGGCTTTGACACCAAAAGCGGAAATCGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTTCAAGCGCGTATGTTGTCGCAAGCGATGCGTAAACTGACGGGTAACCTCAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACCACTGGCGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTTTGGATATTCGCCGTACTGGCGCAATCAAAGAAGGCGAAGAAGTGGTTGGTAACGAA
ACCCGTATCAAGGTTGTGAAGAACAAGATTGCGGCACCGTTTAAAGAAGCCAACACTCAGATCATGTACGGCCAAGGTTT
CAACCGTGAAGGTGAATTGATCGATCTTGGTGTGAAACACAAGATGGTTGAAAAGTCAGGTGCTTGGTACAGCTACAACG
GCGATAAAATCGGCCAAGGTAAAGCGAATGCCTGCAAGTATCTGAAAGAAAATCCAGAGATTGCTAAGACGCTAGACAAA
AAACTACGTGAAATGCTGCTTAACCCAGAAAATATGCAACTGACTGGTGAAACGGCTTCTGCCGCTGATGATGTAGAATT
TGGTGCAGTGCCAGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A5F9B5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

99.153

100

0.992
  recA Vibrio cholerae O1 biovar El Tor strain E7946

99.153

100

0.992
  recA Pseudomonas stutzeri DSM 10701

75.841

92.373

0.701
  recA Glaesserella parasuis strain SC1401

68.946

99.153

0.684
  recA Acinetobacter baumannii D1279779

73.7

92.373

0.681
  recA Acinetobacter baylyi ADP1

73.394

92.373

0.678
  recA Neisseria gonorrhoeae MS11

67.232

100

0.672
  recA Neisseria gonorrhoeae MS11

67.232

100

0.672
  recA Neisseria gonorrhoeae strain FA1090

67.232

100

0.672
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.853

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.739

97.458

0.602
  recA Helicobacter pylori strain NCTC11637

61.062

95.763

0.585
  recA Helicobacter pylori 26695

60.767

95.763

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

90.678

0.579
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

93.503

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Streptococcus mitis SK321

61.92

91.243

0.565
  recA Streptococcus mutans UA159

61.231

91.808

0.562
  recA Lactococcus lactis subsp. cremoris KW2

60.991

91.243

0.556
  recA Streptococcus pyogenes NZ131

60.615

91.808

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

90.678

0.551

Multiple sequence alignment