Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EQH22_RS09235 Genome accession   NZ_CP035258
Coordinates   1807820..1808986 (-) Length   388 a.a.
NCBI ID   WP_054362818.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901927     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1802820..1813986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH22_RS09205 (EQH22_09665) - 1803134..1803559 (-) 426 WP_238115200.1 hypothetical protein -
  EQH22_RS09210 (EQH22_09670) - 1803690..1804046 (-) 357 Protein_1832 ImmA/IrrE family metallo-endopeptidase -
  EQH22_RS09215 (EQH22_09675) - 1804092..1804298 (-) 207 WP_000366093.1 hypothetical protein -
  EQH22_RS09220 (EQH22_09680) - 1804285..1804446 (-) 162 WP_001055999.1 helix-turn-helix domain-containing protein -
  EQH22_RS09225 (EQH22_09685) lytA 1804811..1805767 (-) 957 WP_000405234.1 N-acetylmuramoyl-L-alanine amidase LytA -
  EQH22_RS09230 (EQH22_09690) - 1806143..1807513 (-) 1371 WP_001036270.1 MATE family efflux transporter -
  EQH22_RS09235 (EQH22_09700) recA 1807820..1808986 (-) 1167 WP_054362818.1 recombinase RecA Machinery gene
  EQH22_RS09240 (EQH22_09705) cinA 1809041..1810297 (-) 1257 WP_000642706.1 competence/damage-inducible protein A Machinery gene
  EQH22_RS09245 (EQH22_09710) brpA 1810382..1811398 (-) 1017 WP_000239278.1 biofilm formation/cell division transcriptional regulator BrpA -
  EQH22_RS09250 (EQH22_09715) - 1811406..1811924 (-) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  EQH22_RS09255 (EQH22_09720) tsaE 1811914..1812357 (-) 444 WP_000288232.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  EQH22_RS09260 (EQH22_09725) comM 1812443..1813063 (-) 621 WP_000839908.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41981.82 Da        Isoelectric Point: 4.8403

>NTDB_id=338173 EQH22_RS09235 WP_054362818.1 1807820..1808986(-) (recA) [Streptococcus pneumoniae strain TVO_1901927]
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLVEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=338173 EQH22_RS09235 WP_054362818.1 1807820..1808986(-) (recA) [Streptococcus pneumoniae strain TVO_1901927]
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAAATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGATCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATCAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGTAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAG
TTACGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

99.485

100

0.995
  recA Streptococcus pneumoniae D39

99.485

100

0.995
  recA Streptococcus pneumoniae R6

99.485

100

0.995
  recA Streptococcus pneumoniae TIGR4

99.485

100

0.995
  recA Streptococcus mitis NCTC 12261

94.072

100

0.941
  recA Streptococcus mitis SK321

93.557

100

0.936
  recA Streptococcus mutans UA159

82.946

99.742

0.827
  recA Streptococcus pyogenes NZ131

90.435

88.918

0.804
  recA Lactococcus lactis subsp. cremoris KW2

78.409

90.722

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

67.63

89.175

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

68.788

85.052

0.585
  recA Glaesserella parasuis strain SC1401

57.641

96.134

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.396

83.247

0.536
  recA Neisseria gonorrhoeae MS11

60.177

87.371

0.526
  recA Neisseria gonorrhoeae strain FA1090

60.177

87.371

0.526
  recA Neisseria gonorrhoeae MS11

60.177

87.371

0.526
  recA Vibrio cholerae strain A1552

62.848

83.247

0.523
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

83.247

0.523
  recA Acinetobacter baumannii D1279779

61.963

84.021

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

85.309

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.824

87.629

0.515
  recA Acinetobacter baylyi ADP1

61.35

84.021

0.515
  recA Helicobacter pylori strain NCTC11637

56.125

90.464

0.508
  recA Helicobacter pylori 26695

56.125

90.464

0.508
  recA Pseudomonas stutzeri DSM 10701

59.509

84.021

0.5
  recA Ralstonia pseudosolanacearum GMI1000

59.937

81.701

0.49

Multiple sequence alignment