Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DEIDE_RS11150 Genome accession   NC_012526
Coordinates   2342925..2343992 (+) Length   355 a.a.
NCBI ID   WP_012694062.1    Uniprot ID   C1CXY5
Organism   Deinococcus deserti VCD115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2337925..2348992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIDE_RS11120 (Deide_19390) - 2338606..2339019 (-) 414 WP_242402910.1 YbaN family protein -
  DEIDE_RS11125 (Deide_19400) rraA 2339093..2339578 (-) 486 WP_041227239.1 ribonuclease E activity regulator RraA -
  DEIDE_RS19550 (Deide_19410) - 2339729..2340283 (+) 555 WP_012694058.1 hypothetical protein -
  DEIDE_RS18490 (Deide_19425) - 2340595..2340825 (+) 231 WP_242402911.1 four-helix bundle copper-binding protein -
  DEIDE_RS11140 (Deide_19430) - 2340989..2342197 (+) 1209 WP_012694060.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  DEIDE_RS11145 (Deide_19440) thpR 2342194..2342928 (+) 735 WP_012694061.1 RNA 2',3'-cyclic phosphodiesterase -
  DEIDE_RS11150 (Deide_19450) recA 2342925..2343992 (+) 1068 WP_012694062.1 recombinase RecA Machinery gene
  DEIDE_RS11155 (Deide_19451) - 2344413..2346266 (+) 1854 WP_162485456.1 hypothetical protein -
  DEIDE_RS11160 (Deide_19452) - 2346263..2346697 (+) 435 WP_012694064.1 pilus assembly FimT family protein -
  DEIDE_RS18495 (Deide_19454) - 2347208..2347906 (+) 699 WP_012694066.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DEIDE_RS11170 (Deide_19460) - 2348143..2348721 (-) 579 WP_012694067.1 biotin transporter BioY -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37772.29 Da        Isoelectric Point: 5.6287

>NTDB_id=33734 DEIDE_RS11150 WP_012694062.1 2342925..2343992(+) (recA) [Deinococcus deserti VCD115]
MSKDSTKELSAPTDARERTKAIETAMSQIEKAFGKGSIMKLGAESKLDVQSVSTGSLSLDLALGIGGIPRGRVTEIYGPE
SGGKTTLALSIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAA
LTPRAEIEGEMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKI
GQPVKLGNDAVGNTVKVKSVKNKVAPPFKEVELTLMYGKGFDQLSDLVTLASDMDIIKKAGSFYSYGDERIGQGKEKAIA
YIAERPEMEQEIRDRVLNAIRGGASEQPTKPALAE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=33734 DEIDE_RS11150 WP_012694062.1 2342925..2343992(+) (recA) [Deinococcus deserti VCD115]
ATGAGCAAAGACAGCACCAAGGAACTCTCCGCTCCCACCGACGCCCGCGAGCGTACCAAGGCGATCGAGACGGCCATGAG
CCAGATCGAGAAGGCCTTCGGCAAGGGCAGCATCATGAAACTGGGCGCCGAGAGCAAACTCGACGTGCAGTCCGTGTCGA
CCGGCAGCCTCAGCCTGGACCTGGCGCTGGGGATCGGCGGTATTCCGCGTGGCCGTGTCACTGAGATCTACGGCCCGGAA
TCCGGCGGCAAGACCACGCTGGCGCTGAGCATCGTGGCTCAGGCTCAGAAGGCCGGCGGGACCTGCGCCTTTATCGATGC
CGAACACGCCCTCGACCCCGTCTACGCCCGCGCCCTCGGGGTCAACACCGACGAACTCCTGGTGTCCCAGCCCGACAACG
GCGAGCAGGCACTGGAAATCATGGAACTGCTGGTCCGCTCCGGCGCCATCGACGTCGTGGTGGTGGACTCGGTGGCCGCC
CTGACCCCCCGCGCGGAAATTGAAGGCGAGATGGGCGACAGCCTCCCGGGGTTGCAGGCCCGGCTGATGAGCCAGGCCCT
GCGTAAGCTCACAGCCATCCTGTCCAAGACCGGCACCGCCGCGATCTTTATCAATCAGGTGCGCGAGAAGATCGGCGTAA
TGTATGGCAACCCCGAAACCACCACTGGGGGCCGTGCGCTGAAGTTCTACGCCTCGGTCCGGTTGGACGTACGTAAGATC
GGTCAGCCGGTGAAGCTCGGCAATGACGCGGTGGGCAACACCGTCAAGGTCAAGAGCGTCAAGAACAAGGTCGCGCCTCC
CTTCAAGGAAGTCGAACTGACGCTGATGTACGGCAAGGGCTTTGATCAGCTCAGCGATCTGGTGACTCTGGCCAGCGATA
TGGACATCATCAAGAAAGCCGGCAGCTTCTACAGCTACGGTGACGAGCGCATCGGACAGGGCAAGGAAAAAGCTATTGCC
TACATTGCCGAGCGTCCCGAAATGGAGCAGGAGATCCGCGACCGGGTGTTGAATGCCATCCGCGGCGGCGCTTCCGAGCA
GCCCACGAAACCGGCCCTGGCCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CXY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

93.294

96.62

0.901
  recA Glaesserella parasuis strain SC1401

66.77

90.704

0.606
  recA Acinetobacter baumannii D1279779

64.048

93.239

0.597
  recA Streptococcus pneumoniae Rx1

65.015

90.986

0.592
  recA Streptococcus pneumoniae TIGR4

65.015

90.986

0.592
  recA Streptococcus pneumoniae R6

65.015

90.986

0.592
  recA Streptococcus pneumoniae D39

65.015

90.986

0.592
  recA Streptococcus mitis SK321

64.706

90.986

0.589
  recA Streptococcus mitis NCTC 12261

64.706

90.986

0.589
  recA Acinetobacter baylyi ADP1

63.03

92.958

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

61.145

93.521

0.572
  recA Streptococcus pyogenes NZ131

62.539

90.986

0.569
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

91.549

0.561
  recA Vibrio cholerae strain A1552

61.231

91.549

0.561
  recA Streptococcus mutans UA159

61.61

90.986

0.561
  recA Bacillus subtilis subsp. subtilis str. 168

61.562

90.141

0.555
  recA Lactococcus lactis subsp. cremoris KW2

58.333

94.648

0.552
  recA Neisseria gonorrhoeae MS11

59.633

92.113

0.549
  recA Neisseria gonorrhoeae strain FA1090

59.633

92.113

0.549
  recA Neisseria gonorrhoeae MS11

59.633

92.113

0.549
  recA Ralstonia pseudosolanacearum GMI1000

62.662

86.761

0.544
  recA Helicobacter pylori 26695

56.471

95.775

0.541
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.259

91.268

0.541
  recA Helicobacter pylori strain NCTC11637

56.176

95.775

0.538
  recA Pseudomonas stutzeri DSM 10701

59.248

89.859

0.532
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

55.689

94.085

0.524

Multiple sequence alignment