Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SOR_RS07045 Genome accession   NC_015291
Coordinates   1393208..1393996 (-) Length   262 a.a.
NCBI ID   WP_000940724.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1388208..1398996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS07020 (SOR_1438) vex2 1389502..1390149 (-) 648 WP_000173735.1 ABC transporter ATP-binding subunit Vex2 -
  SOR_RS07025 (SOR_1439) - 1390162..1391439 (-) 1278 WP_001068257.1 ABC transporter permease -
  SOR_RS07030 (SOR_1440) - 1391574..1392185 (-) 612 WP_000245886.1 CPBP family intramembrane glutamic endopeptidase -
  SOR_RS07040 (SOR_1442) - 1392633..1393208 (-) 576 WP_001029657.1 cysteine hydrolase family protein -
  SOR_RS07045 (SOR_1443) codY 1393208..1393996 (-) 789 WP_000940724.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SOR_RS07050 (SOR_1444) - 1394260..1395837 (-) 1578 WP_000671079.1 DEAD/DEAH box helicase -
  SOR_RS07055 (SOR_1445) - 1395984..1397261 (-) 1278 WP_000841594.1 OFA family MFS transporter -
  SOR_RS07060 (SOR_1446) - 1397453..1398769 (+) 1317 WP_000958954.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29669.01 Da        Isoelectric Point: 5.2441

>NTDB_id=33734 SOR_RS07045 WP_000940724.1 1393208..1393996(-) (codY) [Streptococcus oralis Uo5]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIDCNACIVNNKGRLLGYFMRYKTNNDRVEQFFQTKTFPDVYV
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILAELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIGDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=33734 SOR_RS07045 WP_000940724.1 1393208..1393996(-) (codY) [Streptococcus oralis Uo5]
ATGGCACATTTATTAGAAAAAACAAGAAAAATCACGTCTATTCTAAAGCGCTCTGAGGAGCAACTCCAAGATGAACTTCC
TTACAATGCGATCACACGCCAGTTAGCAGATATTATTGACTGTAACGCTTGTATTGTGAATAACAAGGGACGTCTCTTGG
GTTACTTTATGCGTTATAAGACCAATAATGACCGTGTAGAACAATTCTTCCAAACCAAAACCTTCCCTGACGTCTATGTA
CAAGGGGCAAACATGATCTATGATACGGAAGCCAATCTTCCTGTTGAACATGATTTGACCATTTTCCCTGTGGAGAGCCG
TGCGGACTTTCCAGATGGGTTGACAACGATTGCTCCGATTCATGTATCAGGGATTCGCCTAGGTTCCTTGATCATTTGGC
GCAATGATAAGAAGTTTGAAGATGAAGATTTGATCCTTGTCGAGATTGCCAGCACGGTAGTAGGGATTCAACTATTGAAC
TTCCAACGTGAAGAAGATGAGAAAAATATTCGCCGTCGTACGGCTGTTACCATGGCGGTCAATACCCTTTCCTATTCAGA
ACTTCGTGCCGTATCAGCTATTTTAGCTGAGTTGGATGGGAATGAAGGGCAGCTGACTGCATCAGTTATTGCAGATCGTA
TTGGCATTACGCGCTCAGTGATTGTCAATGCGCTTCGTAAATTGGAGTCGGCGGGAATTATTGAGAGCCGTTCACTCGGA
ATGAAGGGGACTTATCTCAAAGTTCTAATTGGTGATATTTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

63.74

100

0.637
  codY Bacillus subtilis subsp. subtilis str. 168

50

93.893

0.469

Multiple sequence alignment