Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EM803_RS06385 Genome accession   NZ_CP035105
Coordinates   1292586..1293629 (-) Length   347 a.a.
NCBI ID   WP_075668471.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1287586..1298629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM803_RS06355 - 1287827..1288945 (+) 1119 WP_128481615.1 glycosyltransferase family 8 protein -
  EM803_RS06360 - 1288942..1289898 (-) 957 WP_000952288.1 PDC sensor domain-containing protein -
  EM803_RS06365 - 1289920..1290408 (-) 489 WP_001216267.1 shikimate kinase -
  EM803_RS06370 - 1290413..1291009 (-) 597 WP_001871319.1 AMIN domain-containing protein -
  EM803_RS06375 - 1291026..1291301 (-) 276 WP_000146214.1 hypothetical protein -
  EM803_RS06380 eno 1291294..1292574 (-) 1281 WP_128481617.1 phosphopyruvate hydratase -
  EM803_RS06385 recA 1292586..1293629 (-) 1044 WP_075668471.1 recombinase RecA Machinery gene
  EM803_RS06390 - 1293728..1294594 (+) 867 WP_128481618.1 menaquinone biosynthesis family protein -
  EM803_RS06395 - 1294591..1295358 (-) 768 WP_128481619.1 hypothetical protein -
  EM803_RS06400 - 1295445..1296026 (-) 582 WP_000660382.1 hypothetical protein -
  EM803_RS06405 - 1296039..1296623 (-) 585 WP_128481620.1 hypothetical protein -
  EM803_RS06410 - 1296724..1296930 (-) 207 WP_128481621.1 DUF4006 family protein -
  EM803_RS06415 ccoP 1296941..1297819 (-) 879 WP_128481622.1 cytochrome-c oxidase, cbb3-type subunit III -
  EM803_RS06420 - 1297821..1298039 (-) 219 WP_164878965.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37697.46 Da        Isoelectric Point: 5.7176

>NTDB_id=334484 EM803_RS06385 WP_075668471.1 1292586..1293629(-) (recA) [Helicobacter pylori strain Hpbs2]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKVLANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=334484 EM803_RS06385 WP_075668471.1 1292586..1293629(-) (recA) [Helicobacter pylori strain Hpbs2]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACTCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTGGGGA
TTGGGGGCGTTCCAAAAGGCAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTTTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTTATTGACGCTGAGCATGCCTTAGATGTGCATTATGCTAAGAG
GTTGGGCGTGGATACGGAAAATTTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCCGTAGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGACTTATGAGCCATGCATTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACCACTTTAATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAATGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATC
GGCAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCAGAGAAAACGCTAAAGCCTTACTGAAAGAAGACAAAGTCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCAGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.135

100

0.991
  recA Helicobacter pylori 26695

99.135

100

0.991
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.963

94.524

0.746
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.462

93.66

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.157

95.677

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

63.914

94.236

0.602
  recA Acinetobacter baylyi ADP1

63.609

94.236

0.599
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Pseudomonas stutzeri DSM 10701

60.526

98.559

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Streptococcus pneumoniae Rx1

55.84

100

0.565
  recA Streptococcus pneumoniae D39

55.84

100

0.565
  recA Streptococcus pneumoniae R6

55.84

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.84

100

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

54.622

100

0.562
  recA Streptococcus pyogenes NZ131

57.576

95.101

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mitis NCTC 12261

57.447

94.813

0.545
  recA Streptococcus mutans UA159

55.988

96.254

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment