Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ENC22_RS06890 Genome accession   NZ_CP034836
Coordinates   1535965..1537002 (+) Length   345 a.a.
NCBI ID   WP_127969060.1    Uniprot ID   A0AAE6CGM8
Organism   Hahella sp. KA22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1530965..1542002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENC22_RS06865 (ENC22_06865) rnhB 1531022..1531630 (+) 609 WP_127969056.1 ribonuclease HII -
  ENC22_RS06870 (ENC22_06870) - 1531632..1532105 (+) 474 WP_164887212.1 DUF4124 domain-containing protein -
  ENC22_RS06875 (ENC22_06875) fdxA 1532175..1532498 (-) 324 WP_011398974.1 ferredoxin FdxA -
  ENC22_RS06880 (ENC22_06880) mutS 1532631..1535213 (-) 2583 WP_127969058.1 DNA mismatch repair protein MutS -
  ENC22_RS06885 (ENC22_06885) - 1535357..1535848 (+) 492 WP_127969059.1 CinA family protein -
  ENC22_RS06890 (ENC22_06890) recA 1535965..1537002 (+) 1038 WP_127969060.1 recombinase RecA Machinery gene
  ENC22_RS06895 (ENC22_06895) - 1537150..1537632 (-) 483 WP_127969061.1 fibronectin type III domain-containing protein -
  ENC22_RS06900 (ENC22_06900) - 1537944..1538123 (+) 180 WP_127969062.1 hypothetical protein -
  ENC22_RS06905 (ENC22_06905) - 1538137..1538520 (-) 384 WP_127969063.1 SirB2 family protein -
  ENC22_RS06910 (ENC22_06910) moaE 1538673..1539146 (+) 474 WP_127969064.1 molybdopterin synthase catalytic subunit MoaE -
  ENC22_RS06915 (ENC22_06915) mobA 1539180..1539779 (-) 600 WP_127969065.1 molybdenum cofactor guanylyltransferase MobA -
  ENC22_RS06920 (ENC22_06920) - 1539776..1540186 (-) 411 WP_127969066.1 PilZ domain-containing protein -
  ENC22_RS06925 (ENC22_06925) - 1540340..1540624 (-) 285 WP_127969067.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37482.12 Da        Isoelectric Point: 5.8973

>NTDB_id=333336 ENC22_RS06890 WP_127969060.1 1535965..1537002(+) (recA) [Hahella sp. KA22]
MDDNRKKALTAALSQIERQFGKGAVMRMGEQPREIIPSVSTGSLGLDIALGIGGLPYGRIVEIYGPESSGKTTLTLQVIA
EAQRQGKTCAFVDAEHALDPIYAEKLGVNIDQLLVSQPDTGEQALEIADMLVRSGAVDVIIIDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGSVKQANCLMIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSVKEGEEVVGNE
TRVKVVKNKVSPPFRQADFQIMYGRGIYRTGEIIDLGVKEGFVDKSGAWYSYKGDKIGQGKANSSRYLEEHPEIAIEIET
AIRDKLMPKMPAKEKETPVAPVEAE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=333336 ENC22_RS06890 WP_127969060.1 1535965..1537002(+) (recA) [Hahella sp. KA22]
ATGGATGACAATCGTAAGAAGGCGTTGACGGCCGCTTTATCACAAATTGAGCGTCAGTTTGGTAAAGGCGCAGTTATGCG
GATGGGTGAACAGCCAAGAGAAATTATTCCTTCCGTTTCTACTGGTTCGCTTGGGTTGGACATCGCTCTTGGCATCGGCG
GCCTGCCATATGGACGTATTGTCGAGATCTATGGACCTGAGAGTTCCGGTAAAACTACTTTGACTTTGCAGGTGATCGCA
GAAGCGCAGCGTCAGGGCAAAACCTGTGCGTTCGTTGATGCGGAGCATGCGCTGGACCCTATTTACGCAGAGAAGCTTGG
CGTTAATATCGACCAATTGCTGGTTTCTCAGCCCGATACGGGCGAACAGGCTCTGGAAATCGCCGATATGCTGGTACGCT
CCGGCGCGGTTGATGTCATCATCATTGACTCCGTTGCTGCGCTAACGCCAAAGGCGGAAATTGAGGGCGAAATGGGAGAC
TCCCACGTTGGTCTGCAAGCCCGTTTGATGTCACAGGCGCTGAGAAAGTTGACCGGCAGCGTTAAGCAGGCGAATTGCTT
GATGATCTTCATTAACCAGATTCGTATGAAAATCGGTGTCATGTTCGGATCGCCAGAGACCACTACTGGCGGTAACGCGC
TTAAGTTCTATGCTTCCGTCCGTCTTGATATTCGCCGCGTTGGCTCTGTGAAAGAAGGAGAAGAAGTCGTTGGTAACGAG
ACTCGCGTGAAAGTGGTGAAAAACAAAGTGTCTCCTCCTTTTAGACAGGCGGATTTCCAGATCATGTACGGGCGTGGTAT
TTACCGCACTGGAGAGATTATCGATCTGGGCGTGAAGGAAGGCTTTGTTGATAAGTCTGGCGCTTGGTATAGCTACAAAG
GCGACAAGATCGGTCAAGGTAAAGCGAACTCCTCAAGATATCTGGAAGAGCACCCTGAGATTGCGATAGAAATCGAAACC
GCGATCAGAGATAAATTGATGCCGAAGATGCCAGCCAAAGAGAAAGAAACGCCCGTCGCTCCTGTTGAGGCTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.471

98.551

0.803
  recA Vibrio cholerae strain A1552

74.924

94.783

0.71
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.924

94.783

0.71
  recA Acinetobacter baylyi ADP1

74.468

95.362

0.71
  recA Acinetobacter baumannii D1279779

73.7

94.783

0.699
  recA Ralstonia pseudosolanacearum GMI1000

70.746

97.101

0.687
  recA Glaesserella parasuis strain SC1401

72.222

93.913

0.678
  recA Neisseria gonorrhoeae MS11

70.988

93.913

0.667
  recA Neisseria gonorrhoeae MS11

70.988

93.913

0.667
  recA Neisseria gonorrhoeae strain FA1090

70.988

93.913

0.667
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.972

94.783

0.635
  recA Helicobacter pylori 26695

60.87

100

0.609
  recA Helicobacter pylori strain NCTC11637

60.29

100

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.721

97.681

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

93.043

0.594
  recA Streptococcus mutans UA159

57.637

100

0.58
  recA Streptococcus pneumoniae D39

60.123

94.493

0.568
  recA Streptococcus pneumoniae Rx1

60.123

94.493

0.568
  recA Streptococcus pneumoniae R6

60.123

94.493

0.568
  recA Streptococcus pneumoniae TIGR4

60.123

94.493

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

93.043

0.568
  recA Streptococcus pyogenes NZ131

59.146

95.072

0.562
  recA Streptococcus mitis NCTC 12261

59.443

93.623

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.623

0.554
  recA Streptococcus mitis SK321

59.133

93.623

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.447

95.362

0.548

Multiple sequence alignment