Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ELQ88_RS08150 Genome accession   NZ_CP034783
Coordinates   1330346..1331398 (+) Length   350 a.a.
NCBI ID   WP_128872803.1    Uniprot ID   A0A1V4LLU6
Organism   Pseudomonas sp. MPC6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1325346..1336398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELQ88_RS08135 (ELQ88_08135) fdxA 1326443..1326766 (-) 324 WP_128872800.1 ferredoxin FdxA -
  ELQ88_RS08140 (ELQ88_08140) mutS 1326909..1329488 (-) 2580 WP_138964498.1 DNA mismatch repair protein MutS -
  ELQ88_RS08145 (ELQ88_08145) - 1329762..1330262 (+) 501 WP_138964500.1 CinA family protein -
  ELQ88_RS08150 (ELQ88_08150) recA 1330346..1331398 (+) 1053 WP_128872803.1 recombinase RecA Machinery gene
  ELQ88_RS08155 (ELQ88_08155) recX 1331407..1331874 (+) 468 WP_046046277.1 recombination regulator RecX -
  ELQ88_RS08160 (ELQ88_08160) - 1331917..1333035 (-) 1119 WP_128872804.1 TIGR00730 family Rossman fold protein -
  ELQ88_RS08165 (ELQ88_08165) - 1333310..1333510 (+) 201 WP_064676132.1 hypothetical protein -
  ELQ88_RS08170 (ELQ88_08170) - 1333511..1333936 (-) 426 WP_128872805.1 quorum-sensing-regulated virulence factor family protein -
  ELQ88_RS08175 (ELQ88_08175) - 1334125..1334883 (+) 759 WP_138964502.1 tRNA-uridine aminocarboxypropyltransferase -
  ELQ88_RS34065 - 1334962..1335108 (-) 147 WP_161599949.1 hypothetical protein -
  ELQ88_RS08180 (ELQ88_08180) erdR 1335101..1335751 (+) 651 WP_128872807.1 response regulator transcription factor ErdR -
  ELQ88_RS08185 (ELQ88_08185) - 1335826..1336188 (+) 363 WP_064676136.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37284.85 Da        Isoelectric Point: 5.8706

>NTDB_id=332996 ELQ88_RS08150 WP_128872803.1 1330346..1331398(+) (recA) [Pseudomonas sp. MPC6]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKYLAENPDIAATLEK
QLRDKLLSPAPDVKASPAKEKADDLVEVDV

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=332996 ELQ88_RS08150 WP_128872803.1 1330346..1331398(+) (recA) [Pseudomonas sp. MPC6]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGGCTGGACATCGCGCTCGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGCCCTGAATCCTCGGGTAAAACCACGCTGACACTGTCGGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCTGAATATGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCATTGGTGCCAAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCTCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTTATCTTCATCAACCAGATCCGCATGAAAATCGGTGTGATGTTCGGCAGTCCGGAAACCACTACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGACATCCGTCGCACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTTGGTAGCGAG
ACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTCTATGGCAAGGGCAT
CTACCTCAACGGTGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCGTACAACG
GCACCAAGATCGGTCAGGGCAAAGCCAACTCGGCCAAGTACCTGGCAGAAAACCCGGACATCGCCGCGACCCTCGAGAAG
CAATTGCGCGACAAATTGCTGTCTCCAGCACCGGACGTCAAAGCTTCGCCGGCCAAAGAGAAAGCGGATGACCTGGTAGA
AGTGGACGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V4LLU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.143

100

0.871
  recA Acinetobacter baylyi ADP1

73.563

99.429

0.731
  recA Vibrio cholerae strain A1552

73.333

98.571

0.723
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.333

98.571

0.723
  recA Acinetobacter baumannii D1279779

71.676

98.857

0.709
  recA Glaesserella parasuis strain SC1401

70.468

97.714

0.689
  recA Ralstonia pseudosolanacearum GMI1000

69.851

95.714

0.669
  recA Neisseria gonorrhoeae MS11

71.605

92.571

0.663
  recA Neisseria gonorrhoeae MS11

71.605

92.571

0.663
  recA Neisseria gonorrhoeae strain FA1090

71.605

92.571

0.663
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

93.429

0.6
  recA Helicobacter pylori strain NCTC11637

60.059

96.571

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

94.571

0.58
  recA Helicobacter pylori 26695

59.467

96.571

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

61.059

91.714

0.56
  recA Streptococcus pneumoniae TIGR4

58.896

93.143

0.549
  recA Streptococcus pneumoniae R6

58.896

93.143

0.549
  recA Streptococcus pneumoniae Rx1

58.896

93.143

0.549
  recA Streptococcus pneumoniae D39

58.896

93.143

0.549
  recA Streptococcus mutans UA159

59.077

92.857

0.549
  recA Streptococcus pyogenes NZ131

57.927

93.714

0.543
  recA Streptococcus mitis SK321

58.514

92.286

0.54
  recA Streptococcus mitis NCTC 12261

58.514

92.286

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.714

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.585

92.286

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.615

92.857

0.526

Multiple sequence alignment