Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EJ065_RS06650 Genome accession   NZ_CP034669
Coordinates   1574396..1575421 (-) Length   341 a.a.
NCBI ID   WP_128795166.1    Uniprot ID   A0A410RM26
Organism   Corallococcus coralloides strain B035     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1569396..1580421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJ065_RS06630 (EJ065_1315) pssA 1570159..1571013 (+) 855 WP_120620551.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  EJ065_RS06635 (EJ065_1316) - 1571071..1572336 (+) 1266 WP_128795163.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  EJ065_RS06640 (EJ065_1317) - 1572333..1573832 (+) 1500 WP_128795164.1 hypothetical protein -
  EJ065_RS06645 (EJ065_1318) - 1573890..1574399 (+) 510 WP_205694750.1 DUF1285 domain-containing protein -
  EJ065_RS06650 (EJ065_1319) recA 1574396..1575421 (-) 1026 WP_128795166.1 recombinase RecA Machinery gene
  EJ065_RS06655 (EJ065_1320) - 1575703..1577082 (+) 1380 WP_240672747.1 NAD(P)/FAD-dependent oxidoreductase -
  EJ065_RS06660 (EJ065_1321) - 1577005..1578642 (-) 1638 WP_240672748.1 YifB family Mg chelatase-like AAA ATPase -
  EJ065_RS06665 (EJ065_1322) - 1578841..1579356 (-) 516 WP_128795167.1 biopolymer transporter ExbD -
  EJ065_RS06670 (EJ065_1323) - 1579356..1579769 (-) 414 WP_128795168.1 biopolymer transporter ExbD -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 35930.24 Da        Isoelectric Point: 7.0572

>NTDB_id=332311 EJ065_RS06650 WP_128795166.1 1574396..1575421(-) (recA) [Corallococcus coralloides strain B035]
MSRLTEKLKAVAAAVASIEKQFGRGAVMTLGADAPEQKVAIIPTGSVGLDRALGVGGYPRGRVVELFGNESSGKTTLTLH
AIAQVQAVGGVAAFIDAEHALDLSYARKLGVRTEELLVAQPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRMEIRRTGNLKEGDAVV
GSRARVKVVKNKLAPPFQEAEFDVLYGTGIHRAAEVLDLAVSAGVVEKSGSHFSLRGERIGQGRERACEWLREHPDVLEA
LARDLVGATAPAALAGDVAAA

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=332311 EJ065_RS06650 WP_128795166.1 1574396..1575421(-) (recA) [Corallococcus coralloides strain B035]
ATGAGCAGGCTGACGGAGAAGTTGAAGGCAGTGGCGGCGGCGGTGGCGTCCATCGAGAAGCAGTTCGGCCGGGGCGCGGT
GATGACGCTCGGCGCGGACGCACCGGAGCAGAAGGTGGCGATCATCCCCACGGGCTCGGTGGGGTTGGACCGCGCGCTGG
GCGTGGGGGGCTATCCGCGAGGGCGCGTGGTGGAGCTGTTCGGCAACGAGTCCTCCGGCAAGACGACACTCACCCTGCAC
GCCATCGCGCAGGTGCAGGCCGTGGGAGGCGTCGCGGCCTTCATCGACGCGGAGCACGCGCTGGACCTGTCCTATGCGCG
CAAGTTGGGGGTGCGTACGGAGGAGCTGCTCGTGGCGCAGCCGGACACCGGGGAGCAGGCGCTCGAAATCACCGAGCAGC
TCGTGCGCTCGGGCGCCGTGGACCTCATCGTGGTGGATTCCGTGGCGGCGCTGGTTCCCCGGGCGGAGATCGAAGGGGAG
ATGGGTGACGCGCACATGGGCGTCCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGCTCACGGGCGCGGTGAGCCGCTC
CGGCACCTGCATCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACGACGGGGG
GCAACGCGCTGAAGTTCTATTCGTCGGTGCGGATGGAGATCCGCCGCACGGGCAACCTCAAGGAGGGCGACGCGGTGGTG
GGCTCACGGGCCCGCGTGAAGGTGGTGAAGAACAAGCTGGCGCCGCCGTTCCAGGAGGCGGAGTTCGACGTGCTCTACGG
CACGGGCATCCACCGCGCCGCCGAGGTGCTGGACCTGGCCGTGAGCGCGGGCGTGGTGGAGAAGTCGGGCAGCCACTTCA
GCCTGCGGGGTGAGCGCATCGGCCAGGGCCGCGAGCGGGCGTGCGAGTGGCTGCGGGAGCACCCGGACGTCCTGGAGGCC
CTCGCTCGCGACCTGGTGGGCGCCACCGCGCCCGCCGCGCTGGCCGGAGACGTCGCGGCGGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410RM26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

65.312

93.842

0.613
  recA Pseudomonas stutzeri DSM 10701

66.026

91.496

0.604
  recA Acinetobacter baylyi ADP1

63.551

94.135

0.598
  recA Vibrio cholerae strain A1552

63.636

93.548

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.636

93.548

0.595
  recA Acinetobacter baumannii D1279779

63.009

93.548

0.589
  recA Neisseria gonorrhoeae MS11

62.975

92.669

0.584
  recA Neisseria gonorrhoeae strain FA1090

62.975

92.669

0.584
  recA Neisseria gonorrhoeae MS11

62.975

92.669

0.584
  recA Glaesserella parasuis strain SC1401

61.562

93.842

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

62.222

92.375

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

61.218

91.496

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.19

94.135

0.557
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.748

93.255

0.557
  recA Helicobacter pylori 26695

60.194

90.616

0.545
  recA Helicobacter pylori strain NCTC11637

60.194

90.616

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.099

95.015

0.543
  recA Streptococcus pyogenes NZ131

56.832

94.428

0.537
  recA Streptococcus pneumoniae TIGR4

55.556

95.015

0.528
  recA Streptococcus pneumoniae Rx1

55.556

95.015

0.528
  recA Streptococcus pneumoniae D39

55.556

95.015

0.528
  recA Streptococcus pneumoniae R6

55.556

95.015

0.528
  recA Streptococcus mutans UA159

56.25

93.842

0.528
  recA Lactococcus lactis subsp. cremoris KW2

55.937

93.842

0.525
  recA Streptococcus mitis SK321

55.836

92.962

0.519
  recA Streptococcus mitis NCTC 12261

55

93.842

0.516

Multiple sequence alignment