Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EJ065_RS06355 Genome accession   NZ_CP034669
Coordinates   1494225..1495310 (+) Length   361 a.a.
NCBI ID   WP_120620337.1    Uniprot ID   A0A3A8J1D9
Organism   Corallococcus coralloides strain B035     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1489225..1500310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJ065_RS06325 (EJ065_1253) glmS 1489499..1491334 (+) 1836 WP_128795115.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  EJ065_RS06330 (EJ065_1254) - 1491416..1491682 (-) 267 WP_128795116.1 hypothetical protein -
  EJ065_RS06335 (EJ065_1255) - 1491679..1492173 (-) 495 WP_128795117.1 DUF3106 domain-containing protein -
  EJ065_RS06340 (EJ065_1256) - 1492173..1492652 (-) 480 WP_128795118.1 zf-HC2 domain-containing protein -
  EJ065_RS06345 (EJ065_1257) - 1492649..1493251 (-) 603 WP_120576842.1 sigma-70 family RNA polymerase sigma factor -
  EJ065_RS06350 (EJ065_1258) - 1493342..1494112 (+) 771 WP_128795119.1 hypothetical protein -
  EJ065_RS06355 (EJ065_1259) recA 1494225..1495310 (+) 1086 WP_120620337.1 recombinase RecA Machinery gene
  EJ065_RS06360 (EJ065_1260) - 1495483..1497705 (+) 2223 WP_128795120.1 alkaline phosphatase D family protein -
  EJ065_RS06365 (EJ065_1261) - 1497821..1500124 (+) 2304 WP_128795121.1 Tex family protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38746.52 Da        Isoelectric Point: 6.8709

>NTDB_id=332310 EJ065_RS06355 WP_120620337.1 1494225..1495310(+) (recA) [Corallococcus coralloides strain B035]
MAVNQEKEKAIELALAAVERQFGKGSIMRLGNDEPMMKDVQAISTGSTSLDIALGVGGVPRGRIIEIFGPESSGKTTLCL
HIVAEAQKKGGVCGYIDAEHAMDVGYARKLGVRTDDLLLSQPDTGEQGLEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTISKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRMDIRRVGAIKNGENV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGAGISKEGDLIDLASNDGIIEKSGSWFSFKGERIGQGRENAKEYLREHPDTYK
EVEALVLEKYGIGKPAGAAPAADAPSEPAEGEKRPRVKAVK

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=332310 EJ065_RS06355 WP_120620337.1 1494225..1495310(+) (recA) [Corallococcus coralloides strain B035]
ATGGCCGTGAATCAGGAGAAGGAAAAGGCGATCGAGCTGGCGCTGGCGGCGGTGGAGCGTCAGTTCGGCAAGGGTTCCAT
CATGCGGCTCGGCAACGACGAGCCCATGATGAAGGACGTCCAGGCCATTTCGACGGGGTCCACTTCGCTCGACATCGCCC
TGGGCGTGGGCGGCGTGCCGCGCGGGCGCATCATCGAAATCTTCGGGCCGGAGTCCTCCGGCAAGACGACGCTGTGTCTC
CACATCGTCGCGGAGGCGCAGAAGAAGGGCGGCGTGTGCGGCTACATCGACGCCGAGCACGCGATGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGACGACCTGCTCCTGTCCCAGCCGGACACCGGTGAGCAGGGCCTCGAAATCGCGGAGA
TGCTCGTGCGCTCCGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAACTGGAAGGC
GAGATGGGCGACGCGCACATGGGCGTGCAGGCGCGCCTCATGAGCCAGGCGCTGCGCAAGCTCACGGGCACCATCTCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACCACCACGG
GCGGCAACGCGCTGAAGTTCTACGCGTCGCAGCGCATGGACATCCGCCGCGTGGGCGCCATCAAGAACGGCGAGAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTCGTGAAGAACAAGGTGGCGCCTCCCTTCAAGGAGGTGGAGTTCGACATCATGTA
CGGCGCGGGCATCTCGAAGGAGGGCGACCTCATCGACCTCGCGTCCAACGACGGCATCATCGAGAAGAGCGGCAGCTGGT
TCTCCTTCAAGGGAGAGCGCATCGGCCAGGGCCGGGAGAACGCGAAGGAGTACCTGCGCGAGCACCCGGACACCTACAAG
GAGGTCGAGGCGCTGGTGCTGGAGAAGTACGGCATCGGCAAGCCCGCGGGTGCGGCGCCCGCCGCGGACGCCCCCAGCGA
GCCGGCGGAAGGCGAGAAGCGCCCGCGCGTGAAGGCCGTGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A8J1D9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

66.667

91.413

0.609
  recA Latilactobacillus sakei subsp. sakei 23K

63.478

95.568

0.607
  recA Helicobacter pylori strain NCTC11637

60.114

97.23

0.584
  recA Vibrio cholerae strain A1552

65.732

88.92

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.732

88.92

0.584
  recA Neisseria gonorrhoeae MS11

64.815

89.751

0.582
  recA Neisseria gonorrhoeae strain FA1090

64.815

89.751

0.582
  recA Neisseria gonorrhoeae MS11

64.815

89.751

0.582
  recA Acinetobacter baylyi ADP1

59.49

97.784

0.582
  recA Helicobacter pylori 26695

59.544

97.23

0.579
  recA Acinetobacter baumannii D1279779

60.997

94.46

0.576
  recA Pseudomonas stutzeri DSM 10701

64.486

88.92

0.573
  recA Glaesserella parasuis strain SC1401

64.89

88.366

0.573
  recA Streptococcus pneumoniae Rx1

61.631

91.69

0.565
  recA Streptococcus pneumoniae D39

61.631

91.69

0.565
  recA Streptococcus pneumoniae R6

61.631

91.69

0.565
  recA Streptococcus pneumoniae TIGR4

61.631

91.69

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

62.08

90.582

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.329

91.69

0.562
  recA Streptococcus mitis NCTC 12261

60.423

91.69

0.554
  recA Streptococcus mitis SK321

60.423

91.69

0.554
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

91.967

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.728

89.751

0.554
  recA Streptococcus pyogenes NZ131

59.697

91.413

0.546
  recA Lactococcus lactis subsp. cremoris KW2

58.308

91.69

0.535
  recA Streptococcus mutans UA159

57.704

91.69

0.529

Multiple sequence alignment