Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SULAZ_RS00795 Genome accession   NC_012438
Coordinates   142523..143545 (+) Length   340 a.a.
NCBI ID   WP_012674242.1    Uniprot ID   C1DXP9
Organism   Sulfurihydrogenibium azorense Az-Fu1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 137523..148545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SULAZ_RS00775 (SULAZ_0160) prfB 138298..139410 (+) 1113 WP_012674642.1 peptide chain release factor 2 -
  SULAZ_RS00780 (SULAZ_0161) queC 139403..140062 (+) 660 WP_012675050.1 7-cyano-7-deazaguanine synthase QueC -
  SULAZ_RS00785 (SULAZ_0162) topA 140065..142092 (+) 2028 WP_012674102.1 type I DNA topoisomerase -
  SULAZ_RS00790 (SULAZ_0163) gatC 142220..142507 (+) 288 WP_012674358.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SULAZ_RS00795 (SULAZ_0164) recA 142523..143545 (+) 1023 WP_012674242.1 recombinase RecA Machinery gene
  SULAZ_RS00800 (SULAZ_0165) - 143535..144650 (+) 1116 WP_012674626.1 PilT/PilU family type 4a pilus ATPase -
  SULAZ_RS00805 (SULAZ_0166) - 144640..145059 (+) 420 WP_012673672.1 regulatory protein RecX -
  SULAZ_RS00810 (SULAZ_0167) - 145056..145991 (+) 936 WP_012673990.1 bifunctional riboflavin kinase/FAD synthetase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37013.60 Da        Isoelectric Point: 6.3280

>NTDB_id=33101 SULAZ_RS00795 WP_012674242.1 142523..143545(+) (recA) [Sulfurihydrogenibium azorense Az-Fu1]
MTEEKDLEAKKKALESAILQIEKRYGKGSLMTLSSEGVKSVEVIPSGSISLDIATGIGGIPKGRVIEIYGPESSGKTTLT
LHIIAEAQKKGGKAVFIDAEHAFDPKYAKAIGVNLDDLIISQPDYGEQAIEIAETLVRSNAIDVIVIDSVAALVPKAELE
GDIEDSNVGLHARLMSKAMRVLKGAVNKSNTALILINQIREKVGVMFGNPETTTGGRAIKFFADMRMEVRKSDLKTDGEK
VGSRVKVKVVKNKLAPPFKEAEFDVIYGEGISKEGEILDLGEEIGVIKKSGSWYSYKDEDTKEEIKLGQGREKAREFLKQ
NPDVTQKIENLIKGRLLNGT

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=33101 SULAZ_RS00795 WP_012674242.1 142523..143545(+) (recA) [Sulfurihydrogenibium azorense Az-Fu1]
ATGACTGAAGAAAAAGATTTAGAAGCAAAGAAGAAAGCTTTAGAAAGTGCTATCTTACAGATAGAGAAAAGGTACGGGAA
AGGGTCTTTAATGACACTATCTTCAGAAGGTGTAAAATCTGTTGAGGTAATACCATCTGGGTCTATATCACTGGATATAG
CAACTGGTATAGGTGGAATACCAAAAGGTAGAGTGATTGAGATATACGGTCCTGAATCATCAGGGAAAACAACGTTAACT
TTACACATAATAGCAGAAGCTCAGAAAAAAGGTGGTAAAGCAGTTTTCATAGATGCAGAACACGCCTTTGACCCTAAGTA
TGCAAAAGCAATCGGTGTAAATCTTGATGACTTAATCATCTCCCAACCAGATTACGGAGAACAAGCAATAGAGATAGCAG
AGACATTAGTAAGAAGTAATGCTATTGATGTTATAGTCATAGACTCTGTGGCAGCTTTAGTTCCAAAGGCAGAGTTAGAG
GGAGATATAGAAGACTCAAACGTAGGACTTCATGCAAGACTTATGTCTAAGGCAATGAGAGTGTTGAAAGGTGCAGTTAA
TAAAAGTAATACCGCCTTAATTCTTATAAACCAGATAAGAGAAAAAGTAGGAGTTATGTTTGGAAACCCAGAAACAACAA
CAGGTGGTAGAGCTATAAAGTTTTTTGCAGATATGAGAATGGAGGTAAGAAAGAGTGATTTAAAAACAGACGGAGAAAAG
GTAGGAAGTAGAGTTAAAGTAAAAGTTGTAAAAAATAAACTTGCACCACCTTTTAAAGAAGCTGAGTTTGACGTTATATA
CGGAGAAGGCATATCAAAAGAAGGGGAGATATTGGACTTAGGAGAAGAGATTGGTGTTATAAAGAAAAGTGGATCTTGGT
ACTCTTACAAAGATGAAGACACAAAAGAAGAGATAAAACTTGGACAAGGTAGAGAAAAAGCAAGAGAGTTTTTAAAGCAA
AACCCAGATGTTACCCAAAAAATAGAAAACCTCATAAAAGGGAGGTTATTAAATGGAACTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DXP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

61.231

95.588

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.967

96.765

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.784

98.235

0.568
  recA Streptococcus mitis SK321

58.055

96.765

0.562
  recA Streptococcus mitis NCTC 12261

57.751

96.765

0.559
  recA Lactococcus lactis subsp. cremoris KW2

57.447

96.765

0.556
  recA Streptococcus pneumoniae Rx1

56.627

97.647

0.553
  recA Streptococcus pneumoniae D39

56.627

97.647

0.553
  recA Streptococcus pneumoniae R6

56.627

97.647

0.553
  recA Streptococcus pneumoniae TIGR4

56.627

97.647

0.553
  recA Glaesserella parasuis strain SC1401

56.667

97.059

0.55
  recA Helicobacter pylori strain NCTC11637

57.012

96.471

0.55
  recA Helicobacter pylori 26695

57.012

96.471

0.55
  recA Pseudomonas stutzeri DSM 10701

56.193

97.353

0.547
  recA Neisseria gonorrhoeae MS11

55.422

97.647

0.541
  recA Neisseria gonorrhoeae strain FA1090

55.422

97.647

0.541
  recA Neisseria gonorrhoeae MS11

55.422

97.647

0.541
  recA Streptococcus mutans UA159

55.927

96.765

0.541
  recA Ralstonia pseudosolanacearum GMI1000

57.729

93.235

0.538
  recA Acinetobacter baumannii D1279779

54.985

97.353

0.535
  recA Vibrio cholerae O1 biovar El Tor strain E7946

54.819

97.647

0.535
  recA Vibrio cholerae strain A1552

54.819

97.647

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.869

98.824

0.532
  recA Acinetobacter baylyi ADP1

54.711

96.765

0.529
  recA Streptococcus pyogenes NZ131

54.407

96.765

0.526
  recA Latilactobacillus sakei subsp. sakei 23K

55.625

94.118

0.524

Multiple sequence alignment