Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D8X56_RS00865 Genome accession   NZ_CP034314
Coordinates   159549..160592 (+) Length   347 a.a.
NCBI ID   WP_024114817.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP42K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 154549..165592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8X56_RS00830 (D8X56_00830) - 155141..155359 (+) 219 WP_002205389.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  D8X56_RS00835 (D8X56_00835) ccoP 155361..156239 (+) 879 WP_000346897.1 cytochrome-c oxidase, cbb3-type subunit III -
  D8X56_RS00840 (D8X56_00840) - 156250..156456 (+) 207 WP_108356813.1 DUF4006 family protein -
  D8X56_RS00845 (D8X56_00845) - 156557..157141 (+) 585 WP_125301389.1 hypothetical protein -
  D8X56_RS00850 (D8X56_00850) - 157153..157734 (+) 582 WP_125301391.1 hypothetical protein -
  D8X56_RS00855 (D8X56_00855) - 157823..158590 (+) 768 WP_125301393.1 hypothetical protein -
  D8X56_RS00860 (D8X56_00860) - 158587..159450 (-) 864 WP_125301395.1 menaquinone biosynthesis family protein -
  D8X56_RS00865 (D8X56_00865) recA 159549..160592 (+) 1044 WP_024114817.1 recombinase RecA Machinery gene
  D8X56_RS00870 (D8X56_00870) eno 160604..161884 (+) 1281 WP_125301397.1 phosphopyruvate hydratase -
  D8X56_RS00875 (D8X56_00875) - 161877..162152 (+) 276 WP_000146234.1 hypothetical protein -
  D8X56_RS00880 (D8X56_00880) - 162169..162765 (+) 597 WP_164504027.1 AMIN domain-containing protein -
  D8X56_RS00885 (D8X56_00885) - 162770..163258 (+) 489 WP_078241011.1 shikimate kinase -
  D8X56_RS00890 (D8X56_00890) - 163280..164236 (+) 957 WP_000952282.1 PDC sensor domain-containing protein -
  D8X56_RS00895 (D8X56_00895) - 164233..165336 (-) 1104 WP_125301401.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37669.40 Da        Isoelectric Point: 5.7176

>NTDB_id=330627 D8X56_RS00865 WP_024114817.1 159549..160592(+) (recA) [Helicobacter pylori strain HP42K]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=330627 D8X56_RS00865 WP_024114817.1 159549..160592(+) (recA) [Helicobacter pylori strain HP42K]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGCAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTTTAAGCTTGCACATT
ATTGCAGAATGCCAAAAAAATGGCGGTGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGATGTGCATTATGCTAAGAG
ATTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAAATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCGGTGGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGCTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACTACTTTAATCTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAACGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCCTCCCTCAAGCAGAACGAACAGCATATC
GGTAACAGAGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCTTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTACGGCGTGAAATTAGACATTGTGGATAAGAGCGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCCTATTGAAAGAAGATAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCCGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

99.424

100

0.994
  recA Helicobacter pylori strain NCTC11637

99.424

100

0.994
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.659

94.524

0.744
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.769

93.66

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

95.677

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

64.22

94.236

0.605
  recA Acinetobacter baylyi ADP1

63.914

94.236

0.602
  recA Ralstonia pseudosolanacearum GMI1000

62.202

96.83

0.602
  recA Pseudomonas stutzeri DSM 10701

59.942

98.559

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.012

96.83

0.591
  recA Vibrio cholerae strain A1552

61.012

96.83

0.591
  recA Glaesserella parasuis strain SC1401

60.366

94.524

0.571
  recA Streptococcus pneumoniae Rx1

55.84

100

0.565
  recA Streptococcus pneumoniae D39

55.84

100

0.565
  recA Streptococcus pneumoniae R6

55.84

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.84

100

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

54.622

100

0.562
  recA Streptococcus pyogenes NZ131

57.576

95.101

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mitis NCTC 12261

57.447

94.813

0.545
  recA Streptococcus mutans UA159

55.988

96.254

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment