Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EI285_RS09235 Genome accession   NZ_CP034309
Coordinates   1769297..1770346 (+) Length   349 a.a.
NCBI ID   WP_066162196.1    Uniprot ID   -
Organism   Aliarcobacter skirrowii strain A2S6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1764297..1775346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EI285_RS09210 (EI285_09210) pseF 1764761..1765462 (-) 702 WP_125297034.1 pseudaminic acid cytidylyltransferase -
  EI285_RS09215 (EI285_09215) - 1765452..1766789 (-) 1338 WP_125297035.1 RNA-binding domain-containing protein -
  EI285_RS09220 (EI285_09220) pseC 1766790..1767917 (-) 1128 WP_125297036.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase -
  EI285_RS09225 (EI285_09225) pseB 1767914..1768906 (-) 993 WP_125297037.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  EI285_RS09230 (EI285_09230) - 1769015..1769203 (+) 189 WP_066162194.1 hypothetical protein -
  EI285_RS09235 (EI285_09235) recA 1769297..1770346 (+) 1050 WP_066162196.1 recombinase RecA Machinery gene
  EI285_RS09240 (EI285_09240) - 1770383..1771729 (-) 1347 WP_125297038.1 sodium-dependent transporter -
  EI285_RS09245 (EI285_09245) nfo 1771837..1772682 (+) 846 WP_066162201.1 deoxyribonuclease IV -
  EI285_RS09250 (EI285_09250) dauA 1772689..1774317 (-) 1629 WP_228198757.1 C4-dicarboxylic acid transporter DauA -
  EI285_RS09255 (EI285_09255) - 1774321..1774929 (-) 609 WP_125297039.1 sel1 repeat family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37511.84 Da        Isoelectric Point: 4.7387

>NTDB_id=330617 EI285_RS09235 WP_066162196.1 1769297..1770346(+) (recA) [Aliarcobacter skirrowii strain A2S6]
MDENQKKSLELAIKQIDKAFGKGTLIRLGDKEVIPTEAISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYARDIGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKITGLLNKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIIDKAGAWFSYGDTKIGQGRENSKVFLRDNPAIAKEIE
DKILNSMGINDAIITGSDDSEEDSSSLED

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=330617 EI285_RS09235 WP_066162196.1 1769297..1770346(+) (recA) [Aliarcobacter skirrowii strain A2S6]
ATGGATGAAAATCAAAAAAAATCACTTGAACTTGCTATTAAACAAATAGACAAAGCTTTTGGAAAAGGTACGCTTATTAG
ATTAGGAGATAAAGAGGTAATTCCAACTGAAGCTATTAGTACAGGCTCACTTGGTCTTGATTTAGCTCTTGGTGTTGGAG
GTTTACCAAAAGGAAGAGTTATTGAAATCTATGGACCTGAAAGTTCTGGAAAAACAACTTTAACACTTCACGCAATTGCA
GAAGCTCAAAAAGCGGGTGGAGTTTGTGCATTTATAGATGCTGAGCATGCTTTAGATGTAAAATATGCAAGAGATATTGG
AGTTGATACAGACAATTTACTTGTTTCTCAACCTGATTTTGGAGAGCAAGCTTTAGAGATACTTGAAACTGTTATTAGAA
GTGGTGCTGTTGATTTAGTTGTTGTGGACTCAGTTGCTGCCTTAACACCAAAAGTAGAAATTGATGGTGATATGGATGAT
CAGCAAGTTGGAGTTCAAGCTAGACTTATGAGTAAAGCTTTAAGAAAAATAACTGGACTTTTAAATAAAATGAACTGTAC
AGTAATTTTTATTAACCAAATAAGAATGAAAATTGGAATGACAGGATATGGAAGTCCAGAAACAACAACAGGTGGAAATG
CTTTAAAATTCTACTCATCAGTAAGACTTGATATTAGAAGAATTGCAACTTTAAAACAGGGCGAGAACTCAATTGGAAAT
AGAGTAAAAGTAAAAGTTGTTAAAAATAAAGTTGCTGCTCCATTTAAACAAGCTGAGTTTGATATTATGTTTGGAGAAGG
TATCTCAAAAACTGGTGAGCTTGTTGATTATGGTGTTAAACTTGATATTATTGATAAAGCTGGAGCTTGGTTTAGTTATG
GTGATACAAAAATTGGACAAGGAAGAGAGAACTCTAAAGTCTTCTTAAGAGATAATCCAGCTATTGCAAAAGAGATTGAA
GATAAAATTTTAAACTCTATGGGAATAAATGATGCAATTATTACAGGAAGCGATGATAGTGAAGAGGATAGCTCTTCTTT
AGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.953

97.708

0.742
  recA Helicobacter pylori strain NCTC11637

74.636

98.281

0.734
  recA Helicobacter pylori 26695

74.344

98.281

0.731
  recA Acinetobacter baumannii D1279779

63.818

100

0.642
  recA Acinetobacter baylyi ADP1

63.037

100

0.63
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.742

94.269

0.61
  recA Neisseria gonorrhoeae MS11

62.647

97.421

0.61
  recA Neisseria gonorrhoeae MS11

62.647

97.421

0.61
  recA Neisseria gonorrhoeae strain FA1090

62.647

97.421

0.61
  recA Glaesserella parasuis strain SC1401

59.77

99.713

0.596
  recA Ralstonia pseudosolanacearum GMI1000

62.31

94.269

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.818

94.556

0.585
  recA Vibrio cholerae strain A1552

61.818

94.556

0.585
  recA Pseudomonas stutzeri DSM 10701

61.145

95.129

0.582
  recA Streptococcus mutans UA159

57.143

100

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

57.184

99.713

0.57
  recA Streptococcus pneumoniae R6

57.02

100

0.57
  recA Streptococcus pneumoniae Rx1

57.02

100

0.57
  recA Streptococcus pneumoniae D39

57.02

100

0.57
  recA Streptococcus pneumoniae TIGR4

57.02

100

0.57
  recA Streptococcus pyogenes NZ131

59.091

94.556

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

59.451

93.983

0.559
  recA Streptococcus mitis NCTC 12261

58.912

94.842

0.559
  recA Streptococcus mitis SK321

58.61

94.842

0.556
  recA Lactococcus lactis subsp. cremoris KW2

57.447

94.269

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

93.41

0.542

Multiple sequence alignment