Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SCA_RS04660 Genome accession   NC_012121
Coordinates   932399..933466 (+) Length   355 a.a.
NCBI ID   WP_015900175.1    Uniprot ID   A0AAJ0NIA1
Organism   Staphylococcus carnosus subsp. carnosus TM300     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 927399..938466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCA_RS04635 (SCA_0921) ymfI 928230..928937 (+) 708 WP_015900170.1 elongation factor P 5-aminopentanone reductase -
  SCA_RS04640 (SCA_0922) - 929066..929905 (+) 840 WP_015900171.1 DUF3388 domain-containing protein -
  SCA_RS04645 (SCA_0923) - 929927..930325 (+) 399 WP_015900172.1 helix-turn-helix domain-containing protein -
  SCA_RS04650 (SCA_0924) pgsA 930356..930934 (+) 579 WP_015900173.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SCA_RS04655 (SCA_0925) - 931085..932227 (+) 1143 WP_015900174.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  SCA_RS04660 (SCA_0926) recA 932399..933466 (+) 1068 WP_015900175.1 recombinase RecA Machinery gene
  SCA_RS04665 (SCA_0927) rny 933741..935300 (+) 1560 WP_015900176.1 ribonuclease Y -
  SCA_RS04670 (SCA_0928) - 935408..936400 (-) 993 WP_015900177.1 YeiH family protein -
  SCA_RS04675 (SCA_0929) - 936522..937346 (+) 825 WP_015900178.1 LysR family transcriptional regulator -
  SCA_RS04680 (SCA_0930) - 937412..937630 (-) 219 WP_015900179.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38707.70 Da        Isoelectric Point: 5.0231

>NTDB_id=33021 SCA_RS04660 WP_015900175.1 932399..933466(+) (recA) [Staphylococcus carnosus subsp. carnosus TM300]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKARRVSSISSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQKQGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNCTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKNYLKEHPEIKQDIDN
KLRQKLGIFDGDIEEKDEKQAEAEKNENTNLFDEE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=33021 SCA_RS04660 WP_015900175.1 932399..933466(+) (recA) [Staphylococcus carnosus subsp. carnosus TM300]
TTGGATAATGAACGTCAAAAAGCGCTAGATACTGTCATTAAGAATATGGAGAAATCGTTTGGTAAAGGTGCAGTTATGAA
ACTAGGCGACAATAAAGCACGTCGTGTTTCAAGTATATCAAGCGGTTCTGTAACATTAGATAACGCTTTAGGTGTCGGTG
GATACCCTAAAGGAAGAATTGTAGAAATTTATGGGCCAGAAAGTTCTGGTAAAACTACTGTAGCTTTACATGCTATTGCG
GAAGTACAAAAACAAGGCGGCGTTGCAGCATTTATCGATGCAGAACATGCACTAGATCCTGTTTATGCTGAAGCATTAGG
TGTAGATATCGATAACTTATATTTATCTCAACCAGACCATGGGGAACAAGGTTTAGAGATTGCTGAAGCATTCGTTCGAA
GCGGTGCTGTAGATATTATTGTTGTCGACTCAGTAGCAGCTTTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCACGTTTAATGTCTCAAGCATTACGTAAACTTTCTGGTGCCATTTCTAAATCAAATTGTAC
TGCTGTTTTCATCAACCAAATCCGTGAAAAAGTCGGTGTTATGTTCGGTAACCCTGAAACAACTCCAGGTGGTAGAGCAT
TGAAATTCTACAGTTCAGTTCGTTTAGAAGTACGTCGTGCTGAACAGTTGAAACAAGGTCAAGAAATTGTGGGTAACCGT
ACTAAAATTAAAGTTGTTAAAAACAAAGTAGCACCACCATTCAGAGTAGCTGAAGTAGATATTATGTATGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATCGACTTAGGTGTTGAAAATGATATCGTTGATAAATCAGGTGCATGGTATTCATATAATG
GAGACAGAATGGGTCAAGGTAAAGAAAATGTCAAAAATTATTTGAAAGAGCATCCTGAAATCAAACAAGATATTGATAAT
AAATTAAGACAAAAATTAGGTATTTTCGATGGCGATATTGAGGAAAAAGATGAAAAACAAGCTGAAGCAGAGAAAAATGA
AAATACAAATTTATTTGATGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.153

91.831

0.69
  recA Latilactobacillus sakei subsp. sakei 23K

69.971

96.62

0.676
  recA Streptococcus pneumoniae Rx1

64.943

98.028

0.637
  recA Streptococcus pneumoniae R6

64.943

98.028

0.637
  recA Streptococcus pneumoniae D39

64.943

98.028

0.637
  recA Streptococcus pneumoniae TIGR4

64.943

98.028

0.637
  recA Streptococcus mutans UA159

63.92

99.155

0.634
  recA Streptococcus mitis NCTC 12261

63.248

98.873

0.625
  recA Neisseria gonorrhoeae MS11

63.506

98.028

0.623
  recA Neisseria gonorrhoeae MS11

63.506

98.028

0.623
  recA Neisseria gonorrhoeae strain FA1090

63.506

98.028

0.623
  recA Streptococcus mitis SK321

63.506

98.028

0.623
  recA Streptococcus pyogenes NZ131

67.173

92.676

0.623
  recA Acinetobacter baylyi ADP1

62.323

99.437

0.62
  recA Lactococcus lactis subsp. cremoris KW2

65.559

93.239

0.611
  recA Vibrio cholerae strain A1552

66.564

91.831

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.564

91.831

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.653

92.676

0.608
  recA Acinetobacter baumannii D1279779

65.031

91.831

0.597
  recA Helicobacter pylori 26695

63.415

92.394

0.586
  recA Helicobacter pylori strain NCTC11637

63.11

92.394

0.583
  recA Pseudomonas stutzeri DSM 10701

63.497

91.831

0.583
  recA Ralstonia pseudosolanacearum GMI1000

65.815

88.169

0.58
  recA Glaesserella parasuis strain SC1401

62.539

90.986

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

93.239

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

90.141

0.541

Multiple sequence alignment