Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EH164_RS04595 Genome accession   NZ_CP034225
Coordinates   984751..985815 (+) Length   354 a.a.
NCBI ID   WP_023480527.1    Uniprot ID   A0A807LEJ9
Organism   Kosakonia sp. CCTCC M2018092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 979751..990815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EH164_RS04570 (EH164_04570) mltB 980254..981336 (+) 1083 WP_042714684.1 lytic murein transglycosylase B -
  EH164_RS04575 (EH164_04575) - 981564..982226 (+) 663 WP_124967452.1 metal ABC transporter ATP-binding protein -
  EH164_RS04580 (EH164_04580) - 982223..983085 (+) 863 Protein_899 metal ABC transporter permease -
  EH164_RS04585 (EH164_04585) - 983097..983975 (+) 879 WP_124967453.1 metal ABC transporter substrate-binding protein -
  EH164_RS04590 (EH164_04590) pncC 984163..984660 (+) 498 WP_124967454.1 nicotinamide-nucleotide amidase -
  EH164_RS04595 (EH164_04595) recA 984751..985815 (+) 1065 WP_023480527.1 recombinase RecA Machinery gene
  EH164_RS04600 (EH164_04600) recX 985883..986398 (+) 516 WP_124971261.1 recombination regulator RecX -
  EH164_RS04605 (EH164_04605) alaS 986529..989159 (+) 2631 WP_124967455.1 alanine--tRNA ligase -
  EH164_RS04610 (EH164_04610) csrA 989398..989583 (+) 186 WP_023480680.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38044.50 Da        Isoelectric Point: 4.8134

>NTDB_id=329884 EH164_RS04595 WP_023480527.1 984751..985815(+) (recA) [Kosakonia sp. CCTCC M2018092]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANATSWLKENPAAAKEI
EKKLREILLSNQTATPEFTVDDKDAGVEETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=329884 EH164_RS04595 WP_023480527.1 984751..985815(+) (recA) [Kosakonia sp. CCTCC M2018092]
ATGGCTATCGACGAAAACAAACAAAAGGCGCTTGCAGCTGCACTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGTCTGGGTGAAGACCGCTCCATGGATGTAGAGACTATCTCTACCGGCTCACTCTCCCTCGACATCGCGCTGGGCG
CGGGCGGTCTGCCAATGGGCCGTATCGTCGAAATTTACGGGCCTGAGTCGTCCGGTAAAACCACGCTCACTTTGCAGGTT
ATCGCTGCCGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCGGAGCACGCGCTGGATCCGGTGTATGCCCGCAA
GCTCGGCGTTGATATCGATAACCTGCTCTGCTCCCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CGCGCTCCGGTGCGGTTGACGTGCTGGTGGTCGACTCCGTTGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCGCTGAAGTTCTACGCTTCCGTTCGTCTCGACATCCGCCGTATCGGCGCGGTGAAAGAGGGCGATGTGGTTGTCGGC
AGCGAAACCCGCGTGAAGGTTGTGAAAAACAAAATCGCGGCACCGTTTAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGCATTAACTTCTATGGCGAGCTGGTCGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCCTGGTACAGCT
ACAACGGCGACAAGATTGGTCAGGGTAAAGCGAACGCGACCTCCTGGCTGAAAGAGAACCCGGCTGCTGCGAAAGAGATC
GAGAAGAAGCTGCGCGAAATTCTGCTCAGCAATCAGACTGCGACGCCAGAGTTCACCGTTGACGACAAAGACGCGGGCGT
TGAAGAAACTAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A807LEJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.366

92.655

0.791
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.366

92.655

0.791
  recA Pseudomonas stutzeri DSM 10701

74.184

95.198

0.706
  recA Acinetobacter baylyi ADP1

72.174

97.458

0.703
  recA Acinetobacter baumannii D1279779

74.018

93.503

0.692
  recA Glaesserella parasuis strain SC1401

68.946

99.153

0.684
  recA Neisseria gonorrhoeae MS11

69.444

91.525

0.636
  recA Neisseria gonorrhoeae MS11

69.444

91.525

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.444

91.525

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.853

0.619
  recA Helicobacter pylori strain NCTC11637

61.721

95.198

0.588
  recA Helicobacter pylori 26695

61.424

95.198

0.585
  recA Streptococcus pneumoniae R6

59.593

97.175

0.579
  recA Streptococcus pneumoniae Rx1

59.593

97.175

0.579
  recA Streptococcus pneumoniae D39

59.593

97.175

0.579
  recA Streptococcus pneumoniae TIGR4

59.593

97.175

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

90.678

0.568
  recA Streptococcus mitis SK321

62.229

91.243

0.568
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Streptococcus pyogenes NZ131

61.846

91.808

0.568
  recA Streptococcus mutans UA159

61.538

91.808

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.42

91.525

0.562
  recA Lactococcus lactis subsp. cremoris KW2

61.61

91.243

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

91.808

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.633

92.373

0.551

Multiple sequence alignment