Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CLA_RS00765 Genome accession   NC_012039
Coordinates   132267..133301 (-) Length   344 a.a.
NCBI ID   WP_012660901.1    Uniprot ID   B9KEN1
Organism   Campylobacter lari RM2100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 127267..138301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLA_RS00730 (CLA0502) - 127646..127807 (+) 162 WP_012660894.1 highly acidic protein -
  CLA_RS00735 (CLA0503) - 127810..129120 (+) 1311 WP_012660895.1 MFS transporter -
  CLA_RS00740 (CLA0504) - 129089..129565 (-) 477 WP_012660896.1 hypothetical protein -
  CLA_RS00745 (CLA0505) - 129674..130057 (+) 384 WP_012660897.1 group III truncated hemoglobin -
  CLA_RS00750 (CLA0506) - 130072..130755 (-) 684 WP_012660898.1 AMIN domain-containing protein -
  CLA_RS08335 - 130745..130906 (-) 162 WP_163197158.1 hypothetical protein -
  CLA_RS00760 (CLA0508) eno 131023..132267 (-) 1245 WP_012660900.1 phosphopyruvate hydratase -
  CLA_RS00765 (CLA0509) recA 132267..133301 (-) 1035 WP_012660901.1 recombinase RecA Machinery gene
  CLA_RS00770 (CLA0510) - 133412..134275 (+) 864 WP_012660902.1 menaquinone biosynthesis family protein -
  CLA_RS00775 (CLA0511) fliQ 134302..134568 (+) 267 WP_012660903.1 flagellar biosynthesis protein FliQ -
  CLA_RS00780 (CLA0512) - 134565..135341 (+) 777 WP_012660904.1 UDP-N-acetylmuramate dehydrogenase -
  CLA_RS00785 (CLA0513) - 135334..135984 (-) 651 WP_012660905.1 hypothetical protein -
  CLA_RS00790 (CLA0514) - 135984..136742 (-) 759 WP_041570260.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CLA_RS00795 (CLA0515) - 136782..137960 (-) 1179 WP_012660907.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37173.59 Da        Isoelectric Point: 5.3375

>NTDB_id=32976 CLA_RS00765 WP_012660901.1 132267..133301(-) (recA) [Campylobacter lari RM2100]
MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEKIDSIPTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIA
ECQKKGGVCAFIDAEHALDVKYAKNLGVDTENLYISQPDFGEQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRLDVRKTATLKQNDEPIGN
RVKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQGRENAKAFLKENPAIADEIT
QAIQNSIGIDSMILGAKEDDEGEE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=32976 CLA_RS00765 WP_012660901.1 132267..133301(-) (recA) [Campylobacter lari RM2100]
ATGGATGATAATAAAAGAAAATCACTTGATGCAGCCTTAAAAAGTCTTGATAAAACCTTTGGAAAAGGTACTATTTTAAG
ACTTGGCGATAAAGAAGTTGAAAAAATTGATTCTATTCCTACAGGCTCGGTTGGGCTGGATTTAGCTTTAGGAATTGGTG
GGGTTCCAAAAGGAAGAATTATAGAAATTTATGGACCTGAAAGTTCAGGTAAAACCACACTTACTTTACATATCATAGCA
GAATGTCAAAAAAAAGGCGGAGTTTGTGCATTTATAGATGCTGAGCATGCTCTTGATGTAAAATATGCGAAAAATTTGGG
CGTAGATACAGAAAATCTTTACATCTCTCAACCTGATTTTGGTGAGCAAGCTTTAGAGATTGTTGAAACTATAGCAAGAA
GTGGGGCTATTGATTTAATAGTAGTAGATAGTGTGGCCGCACTTACTCCAAAAGCTGAAATAGAAGGCGATATGGGAGAT
CAACATGTAGGTCTTCAAGCAAGATTAATGAGCCAAGCTTTAAGAAAACTAACTGGAATTGTTCATAAAATGAACACAAC
GGTGATTTTTATCAATCAAATTCGTATGAAAATAGGTATGATGGGTTATGGCACTCCAGAAACTACAACAGGTGGTAATG
CGCTTAAATTTTACTCTTCAGTGCGTTTAGATGTTAGAAAAACAGCTACTTTAAAACAAAACGATGAGCCTATTGGAAAC
CGCGTTAAAGTAAAAGTAGCTAAAAACAAAGTCGCACCTCCATTTAAACAAGCTGAATTTGATGTGATGTTTGGAGAAGG
TGTTAGCCGTGAGGGCGAGTTGATAGATTATGGTGTGAAACTTGATATTATCGATAAAAGTGGTGCGTGGTTTTCTTATA
AAGCTTCTAAACTTGGTCAAGGTAGAGAAAATGCTAAAGCCTTTTTGAAAGAAAATCCAGCTATTGCAGATGAAATCACT
CAAGCTATACAAAATTCCATTGGTATTGATAGCATGATATTGGGTGCAAAAGAAGATGATGAGGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9KEN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.151

100

0.922
  recA Helicobacter pylori 26695

78.443

97.093

0.762
  recA Helicobacter pylori strain NCTC11637

78.144

97.093

0.759
  recA Neisseria gonorrhoeae MS11

64.928

100

0.651
  recA Neisseria gonorrhoeae MS11

64.928

100

0.651
  recA Neisseria gonorrhoeae strain FA1090

64.928

100

0.651
  recA Glaesserella parasuis strain SC1401

62.391

99.709

0.622
  recA Acinetobacter baylyi ADP1

62.209

100

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.855

96.512

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

63.72

95.349

0.608
  recA Acinetobacter baumannii D1279779

63.914

95.058

0.608
  recA Pseudomonas stutzeri DSM 10701

62.84

96.221

0.605
  recA Vibrio cholerae strain A1552

62.346

94.186

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.346

94.186

0.587
  recA Ralstonia pseudosolanacearum GMI1000

63.722

92.151

0.587
  recA Streptococcus pyogenes NZ131

59.091

95.93

0.567
  recA Streptococcus mitis NCTC 12261

58.359

95.64

0.558
  recA Streptococcus mutans UA159

58.006

96.221

0.558
  recA Streptococcus pneumoniae TIGR4

58.055

95.64

0.555
  recA Streptococcus pneumoniae Rx1

58.055

95.64

0.555
  recA Streptococcus pneumoniae D39

58.055

95.64

0.555
  recA Streptococcus pneumoniae R6

58.055

95.64

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

58.41

95.058

0.555
  recA Streptococcus mitis SK321

57.751

95.64

0.552
  recA Lactococcus lactis subsp. cremoris KW2

56.839

95.64

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.481

94.186

0.532

Multiple sequence alignment