Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EG352_RS11605 Genome accession   NZ_CP033930
Coordinates   2580740..2581741 (+) Length   333 a.a.
NCBI ID   WP_027373769.1    Uniprot ID   -
Organism   Chryseobacterium indologenes strain H5559     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2575740..2586741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG352_RS11585 (EG352_11685) gap 2576564..2577568 (+) 1005 WP_060868743.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  EG352_RS11590 (EG352_11690) - 2577641..2578141 (-) 501 WP_081806336.1 papain-like cysteine protease family protein -
  EG352_RS11595 (EG352_11695) - 2578320..2579117 (+) 798 WP_060868745.1 LuxR C-terminal-related transcriptional regulator -
  EG352_RS11600 (EG352_11700) - 2579189..2580385 (+) 1197 WP_027373768.1 oxygenase MpaB family protein -
  EG352_RS11605 (EG352_11705) recA 2580740..2581741 (+) 1002 WP_027373769.1 recombinase RecA Machinery gene
  EG352_RS11610 (EG352_11710) - 2581866..2583308 (-) 1443 WP_060868749.1 hypothetical protein -
  EG352_RS11615 (EG352_11715) - 2583478..2586369 (-) 2892 WP_060868748.1 S9 family peptidase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35856.23 Da        Isoelectric Point: 5.3469

>NTDB_id=327253 EG352_RS11605 WP_027373769.1 2580740..2581741(+) (recA) [Chryseobacterium indologenes strain H5559]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDESIDNTVEVIPSGSLGLDIALGIGGYPKGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKNGDEA
IGSRVKVKIVKNKVAPPFKMAEFDIMYGEGVSKVGEILDTAVDMGIVKKSGSWFSYEESKLGQGRDAVKDVLKDNPELSE
ELENKIKEELKNK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=327253 EG352_RS11605 WP_027373769.1 2580740..2581741(+) (recA) [Chryseobacterium indologenes strain H5559]
ATGAGTAACATTGATGATAAGAAAAAAGCACTGGCATTGGTGCTTGATAAGTTAGATAAAACATACGGAAAGGGAACGGT
AATGACTTTAGGTGATGAATCTATAGACAATACGGTAGAAGTAATTCCTTCGGGTTCTTTAGGATTAGATATCGCATTAG
GGATAGGAGGATATCCGAAAGGGAGAATCATTGAAATCTATGGTCCTGAATCTTCCGGTAAAACAACTTTAACACTTCAT
GCGATTGCTGAAGCTCAGAAAGCAGGTGGTATTGCTGCATTCATTGATGCAGAGCACGCTTTCGACAGAACATATGCTGC
AAAATTAGGAATCGATTTGGAAAACCTTATCATTTCTCAACCGGATAACGGAGAGCAGGCTTTGGAAATTGCCGATAACC
TGATCCGTTCAGGAGCTATTGATATCGTAGTCATTGACTCTGTAGCAGCACTTACACCAAAAGCAGAGATTGAAGGGGAA
ATGGGAGATTCTAAAATGGGTCTTCACGCAAGATTAATGTCTCAGGCATTAAGAAAGCTTACTGCAACTATTTCAAGAAC
GAAATGTACGGTGATCTTCATCAACCAGCTAAGAGAAAAAATCGGTGTAATGTTCGGAAACCCAGAAACGACTACCGGAG
GTAACGCTCTTAAATTCTACGCTTCTGTAAGAATTGATATCAGAAAAGCAAGTGCTCCAATCAAAAATGGAGATGAAGCA
ATAGGAAGTCGTGTAAAAGTGAAAATTGTGAAAAACAAAGTAGCTCCACCATTCAAGATGGCTGAATTTGATATTATGTA
CGGAGAAGGGGTTTCTAAAGTGGGAGAAATTCTTGATACCGCAGTAGATATGGGAATTGTAAAGAAAAGCGGTTCATGGT
TCAGCTATGAAGAATCTAAACTGGGTCAGGGACGTGATGCCGTAAAAGATGTTTTAAAAGATAATCCTGAACTTTCTGAG
GAATTAGAAAACAAAATTAAGGAAGAATTGAAAAACAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.88

100

0.799
  recA Acinetobacter baylyi ADP1

65.35

98.799

0.646
  recA Acinetobacter baumannii D1279779

64.724

97.898

0.634
  recA Glaesserella parasuis strain SC1401

63.914

98.198

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

98.198

0.625
  recA Helicobacter pylori strain NCTC11637

62.691

98.198

0.616
  recA Helicobacter pylori 26695

62.691

98.198

0.616
  recA Ralstonia pseudosolanacearum GMI1000

65.495

93.994

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

62.27

97.898

0.61
  recA Neisseria gonorrhoeae MS11

62.539

96.997

0.607
  recA Neisseria gonorrhoeae strain FA1090

62.539

96.997

0.607
  recA Neisseria gonorrhoeae MS11

62.539

96.997

0.607
  recA Pseudomonas stutzeri DSM 10701

61.35

97.898

0.601
  recA Streptococcus pyogenes NZ131

61.043

97.898

0.598
  recA Streptococcus mitis SK321

60.923

97.598

0.595
  recA Streptococcus mitis NCTC 12261

60.923

97.598

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.182

98.799

0.595
  recA Vibrio cholerae strain A1552

60.182

98.799

0.595
  recA Lactococcus lactis subsp. cremoris KW2

60.429

97.898

0.592
  recA Streptococcus mutans UA159

60.123

97.898

0.589
  recA Streptococcus pneumoniae Rx1

59.756

98.498

0.589
  recA Streptococcus pneumoniae D39

59.756

98.498

0.589
  recA Streptococcus pneumoniae R6

59.756

98.498

0.589
  recA Streptococcus pneumoniae TIGR4

59.756

98.498

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

59.443

96.997

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.055

97.898

0.559

Multiple sequence alignment