Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EG345_RS01285 Genome accession   NZ_CP033921
Coordinates   292084..293091 (-) Length   335 a.a.
NCBI ID   WP_034749257.1    Uniprot ID   -
Organism   Chryseobacterium carnipullorum strain F9942     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 287084..298091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG345_RS25035 (EG345_01285) - 287305..287451 (-) 147 WP_164466099.1 hypothetical protein -
  EG345_RS01265 (EG345_01290) - 287567..287863 (+) 297 WP_123878462.1 MGMT family protein -
  EG345_RS01270 (EG345_01295) - 288410..288790 (-) 381 WP_073334296.1 helix-turn-helix transcriptional regulator -
  EG345_RS01275 (EG345_01300) htpG 289289..291181 (-) 1893 WP_123878464.1 molecular chaperone HtpG -
  EG345_RS01280 (EG345_01305) - 291285..292010 (-) 726 WP_123878465.1 phosphodiester glycosidase family protein -
  EG345_RS01285 (EG345_01310) recA 292084..293091 (-) 1008 WP_034749257.1 recombinase RecA Machinery gene
  EG345_RS01290 (EG345_01315) - 293295..294482 (-) 1188 WP_123878467.1 oxygenase MpaB family protein -
  EG345_RS01295 (EG345_01320) - 294573..295394 (-) 822 WP_228459228.1 LuxR C-terminal-related transcriptional regulator -
  EG345_RS01300 (EG345_01325) - 295775..296911 (+) 1137 WP_123897642.1 hypothetical protein -
  EG345_RS25040 - 296917..297063 (+) 147 WP_164466101.1 hypothetical protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36019.33 Da        Isoelectric Point: 5.8993

>NTDB_id=327115 EG345_RS01285 WP_034749257.1 292084..293091(-) (recA) [Chryseobacterium carnipullorum strain F9942]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDSTIDTTIEVIPSGSLGLDIALGVGGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRGYAGKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRVDIRKASAPIKNGDEA
VGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKTGEILDQAVEQGIVKKSGSWFSYEETKLGQGRDAVKDVLKDNPELAE
ELENKIKEELKNKVK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=327115 EG345_RS01285 WP_034749257.1 292084..293091(-) (recA) [Chryseobacterium carnipullorum strain F9942]
ATGAGCAACATAGACGATAAGAAAAAAGCACTTGCATTAGTGCTTGACAAGCTAGATAAAACATACGGAAAAGGAACGGT
AATGACTTTAGGTGACAGTACAATTGATACGACCATTGAAGTGATTCCTTCCGGATCTTTGGGATTAGACATCGCTCTTG
GAGTAGGTGGATACCCTAGAGGAAGAATCATTGAGATCTACGGACCTGAATCTTCCGGTAAAACAACTTTAACACTTCAC
GCGATTGCAGAAGCTCAAAAAGCAGGTGGAATTGCAGCATTTATTGATGCAGAGCACGCTTTTGACAGAGGTTATGCAGG
AAAATTAGGAATCGATCTTGAAAACTTAATTATTTCTCAGCCGGACAACGGGGAACAGGCTTTGGAAATTGCTGATAACC
TGATCCGTTCAGGGGCAATCGACATTGTGGTTATTGACTCCGTTGCAGCATTAACTCCAAAAGCAGAAATTGAAGGAGAA
ATGGGAGATTCCAAAATGGGTCTTCACGCAAGATTGATGTCTCAGGCATTGAGAAAACTGACTGCTACGATTTCCAGAAC
AAAATGTACCGTTATTTTCATTAACCAATTGAGAGAAAAAATCGGGGTGATGTTCGGAAATCCGGAAACCACAACCGGTG
GTAATGCATTGAAATTCTACGCTTCTGTAAGAGTAGATATCAGAAAAGCGAGTGCACCGATTAAAAACGGAGATGAAGCA
GTAGGAAGCCGTGTGAAAGTGAAAATTGTAAAAAACAAAGTAGCGCCACCTTTCAAACAAGCTGAATTTGACATTATGTA
CGGTGAAGGAGTTTCTAAAACAGGAGAAATTCTTGATCAGGCTGTAGAACAGGGAATTGTAAAGAAAAGCGGTTCTTGGT
TCAGCTATGAAGAAACCAAATTGGGACAAGGTCGTGACGCAGTAAAAGACGTGTTGAAAGACAACCCTGAGCTAGCTGAG
GAATTAGAAAATAAAATCAAAGAAGAATTGAAAAATAAAGTAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.88

99.403

0.794
  recA Acinetobacter baumannii D1279779

65.031

97.313

0.633
  recA Acinetobacter baylyi ADP1

64.438

98.209

0.633
  recA Glaesserella parasuis strain SC1401

64.11

97.313

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

97.612

0.621
  recA Ralstonia pseudosolanacearum GMI1000

66.454

93.433

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

63.19

97.313

0.615
  recA Neisseria gonorrhoeae MS11

63.467

96.418

0.612
  recA Neisseria gonorrhoeae strain FA1090

63.467

96.418

0.612
  recA Neisseria gonorrhoeae MS11

63.467

96.418

0.612
  recA Helicobacter pylori strain NCTC11637

62.08

97.612

0.606
  recA Helicobacter pylori 26695

62.08

97.612

0.606
  recA Pseudomonas stutzeri DSM 10701

61.963

97.313

0.603
  recA Vibrio cholerae strain A1552

60.366

97.91

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.366

97.91

0.591
  recA Lactococcus lactis subsp. cremoris KW2

59.816

97.313

0.582
  recA Streptococcus mitis NCTC 12261

60

97.015

0.582
  recA Streptococcus mitis SK321

60

97.015

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

96.418

0.579
  recA Streptococcus pyogenes NZ131

59.509

97.313

0.579
  recA Streptococcus pneumoniae Rx1

58.841

97.91

0.576
  recA Streptococcus pneumoniae D39

58.841

97.91

0.576
  recA Streptococcus pneumoniae R6

58.841

97.91

0.576
  recA Streptococcus pneumoniae TIGR4

58.841

97.91

0.576
  recA Streptococcus mutans UA159

58.589

97.313

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

97.313

0.552

Multiple sequence alignment