Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   CSW63_RS17155 Genome accession   NZ_CP033875
Coordinates   3262278..3263348 (-) Length   356 a.a.
NCBI ID   WP_062093456.1    Uniprot ID   A0A3S9VI13
Organism   Caulobacter sp. FWC26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 3257278..3268348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSW63_RS17135 (CSW63_17120) - 3257563..3258441 (-) 879 WP_062093459.1 GyrI-like domain-containing protein -
  CSW63_RS17140 (CSW63_17125) alaS 3258584..3261226 (-) 2643 WP_062093458.1 alanine--tRNA ligase -
  CSW63_RS17150 (CSW63_17135) - 3261585..3262004 (-) 420 WP_062093457.1 OsmC family protein -
  CSW63_RS17155 (CSW63_17140) recA 3262278..3263348 (-) 1071 WP_062093456.1 recombinase RecA Machinery gene
  CSW63_RS17160 (CSW63_17145) - 3263613..3265220 (+) 1608 WP_168193681.1 EAL domain-containing protein -
  CSW63_RS17165 (CSW63_17150) - 3265261..3267084 (-) 1824 WP_062093454.1 DUF885 family protein -
  CSW63_RS17170 (CSW63_17155) - 3267189..3267566 (-) 378 WP_062093453.1 DUF4440 domain-containing protein -
  CSW63_RS17175 (CSW63_17160) - 3267635..3268168 (+) 534 WP_062093452.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 37929.27 Da        Isoelectric Point: 5.1987

>NTDB_id=326693 CSW63_RS17155 WP_062093456.1 3262278..3263348(-) (recA) [Caulobacter sp. FWC26]
MTSQAALKLVAKEEGDKQRALEAALAQIDRAFGKGSVMKLGEKGKVEMESVSTGSLGLDIALGIGGLPKGRIIEVYGPES
SGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAFKLGVNLDNLLVSQPDNGEQALEITDTLVRSGAVDIVVVDSVAAL
TPKAEIEGEMGDSLPGLQARLMSQALRKLTASINKANTIVIFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTG
SVKARDEIIGNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEVIDLGVKAGIIDKAGSWFSYGSQRIGQGRDNVREFL
KNNPDIANSIEAAVRKSSQKIEEELLVGGPEEGDEE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=326693 CSW63_RS17155 WP_062093456.1 3262278..3263348(-) (recA) [Caulobacter sp. FWC26]
ATGACTAGTCAGGCGGCTTTGAAACTCGTGGCCAAGGAAGAAGGCGATAAGCAACGCGCGCTAGAGGCGGCTCTCGCCCA
GATCGACCGCGCGTTCGGCAAGGGCTCGGTGATGAAGCTGGGCGAAAAGGGCAAGGTCGAGATGGAGTCGGTTTCGACCG
GCTCGCTGGGCCTCGACATCGCGCTCGGCATCGGCGGTCTGCCGAAGGGGCGGATCATTGAGGTCTACGGCCCGGAAAGC
TCGGGTAAGACCACCCTGGCCCTGCACGTCGTGGCCGAGGTCCAGAAGGCCGGCGGCACCGCCGCCTTCGTCGACGCCGA
ACACGCGCTGGACCCGTCCTACGCTTTCAAGCTGGGGGTCAATCTCGACAACCTTCTGGTCTCTCAGCCTGACAACGGCG
AGCAGGCGCTTGAGATCACCGACACCCTGGTGCGGTCGGGCGCCGTGGACATTGTGGTCGTCGACTCGGTCGCAGCGCTG
ACGCCGAAGGCCGAAATCGAAGGCGAGATGGGTGACAGCCTGCCGGGTCTGCAGGCGCGACTGATGAGCCAGGCGCTGCG
CAAGCTGACCGCCTCGATCAACAAGGCCAACACCATCGTCATCTTCATCAACCAGATCCGCCACAAGATCGGGGTGATGT
ACGGCAGCCCGGAGACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGC
TCAGTGAAGGCCCGCGACGAGATCATCGGCAACAACGTCCGCGTGAAGGTGGTGAAGAACAAGGTGGCCCCGCCTTTCCG
CGAGGTCGAGTTCGACATCATGTACGGCGAGGGCATTTCGAAGCTGGGCGAAGTGATCGATCTGGGCGTCAAGGCCGGGA
TCATCGACAAGGCTGGCTCGTGGTTCTCGTACGGCAGCCAGCGCATCGGCCAGGGCCGCGACAATGTCCGCGAGTTCCTG
AAGAACAACCCTGATATCGCCAACAGCATCGAGGCGGCCGTCCGCAAGTCGTCCCAGAAAATCGAGGAAGAGCTTCTGGT
CGGCGGTCCCGAGGAGGGCGACGAGGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A3S9VI13

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

66.959

96.067

0.643

  recA Neisseria gonorrhoeae MS11

66.959

96.067

0.643

  recA Neisseria gonorrhoeae strain FA1090

66.959

96.067

0.643

  recA Glaesserella parasuis strain SC1401

70.405

90.169

0.635

  recA Acinetobacter baumannii D1279779

66.766

93.82

0.626

  recA Acinetobacter baylyi ADP1

69.159

90.169

0.624

  recA Pseudomonas stutzeri DSM 10701

69.375

89.888

0.624

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.069

92.978

0.624

  recA Helicobacter pylori 26695

64.035

96.067

0.615

  recA Bacillus subtilis subsp. subtilis str. 168

67.913

90.169

0.612

  recA Ralstonia pseudosolanacearum GMI1000

70.55

86.798

0.612

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.183

90.73

0.61

  recA Helicobacter pylori strain NCTC11637

63.45

96.067

0.61

  recA Vibrio cholerae strain A1552

64.798

90.169

0.584

  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.798

90.169

0.584

  recA Latilactobacillus sakei subsp. sakei 23K

63.497

91.573

0.581

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.077

91.292

0.576

  recA Streptococcus mutans UA159

59.706

95.506

0.57

  recA Streptococcus pyogenes NZ131

61.027

92.978

0.567

  recA Streptococcus mitis NCTC 12261

61.42

91.011

0.559

  recA Streptococcus mitis SK321

61.111

91.011

0.556

  recA Lactococcus lactis subsp. cremoris KW2

60.429

91.573

0.553

  recA Streptococcus pneumoniae TIGR4

60.802

91.011

0.553

  recA Streptococcus pneumoniae R6

60.802

91.011

0.553

  recA Streptococcus pneumoniae Rx1

60.802

91.011

0.553

  recA Streptococcus pneumoniae D39

60.802

91.011

0.553


Multiple sequence alignment