Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HORE_RS06205 Genome accession   NC_011899
Coordinates   1283476..1284540 (-) Length   354 a.a.
NCBI ID   WP_083763094.1    Uniprot ID   -
Organism   Halothermothrix orenii H 168     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1278476..1289540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HORE_RS06175 (Hore_11830) - 1278574..1279386 (-) 813 WP_012636118.1 PHP domain-containing protein -
  HORE_RS06180 (Hore_11840) - 1279522..1280052 (-) 531 WP_012636119.1 nucleoside recognition domain-containing protein -
  HORE_RS06185 (Hore_11850) - 1280056..1280640 (-) 585 WP_012636120.1 nucleoside recognition domain-containing protein -
  HORE_RS06190 (Hore_11860) - 1280771..1281031 (-) 261 WP_012636121.1 stage V sporulation protein S -
  HORE_RS06195 (Hore_11870) rny 1281217..1282761 (-) 1545 WP_012636122.1 ribonuclease Y -
  HORE_RS06200 (Hore_11880) - 1282965..1283444 (-) 480 WP_012636123.1 regulatory protein RecX -
  HORE_RS06205 (Hore_11890) recA 1283476..1284540 (-) 1065 WP_083763094.1 recombinase RecA Machinery gene
  HORE_RS06210 (Hore_11900) thpR 1284645..1285214 (-) 570 WP_012636125.1 RNA 2',3'-cyclic phosphodiesterase -
  HORE_RS06215 (Hore_11910) - 1285219..1286403 (-) 1185 WP_012636126.1 tetratricopeptide repeat protein -
  HORE_RS06220 (Hore_11920) - 1286491..1287732 (-) 1242 WP_012636127.1 competence/damage-inducible protein A -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38358.14 Da        Isoelectric Point: 8.4099

>NTDB_id=32646 HORE_RS06205 WP_083763094.1 1283476..1284540(-) (recA) [Halothermothrix orenii H 168]
MAKNEKEKALEMAVKRIEKQFGQGSIMKLGEATALNVEVIPTGALPLDLALGVGGVPRGRIIEIYGPESSGKTTLALHII
AEAQKRNGVAAFIDAEHALDPKYSENLGVNIDNLLISQPNNGEEALEIAEALVRSNAIDVIVIDSVAALVPKAELDGEMG
DSHVGLQARLMSQAMRKLSGAISKSKTVCIFINQIREKVGVMFGNPETTPGGRALKFYSSVRMEIRKTQTLKNGDEIVGS
QTRVKVVKNKVAPPFRRAIFDIMYGTGISTSGCILDMGVDTGIIDRAGSWYSYGDERLGQGRENAKNFLEDNPDIMKEIE
MKIKERVGLEVEDEVASTKENKSTGKSKAKGKKK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=32646 HORE_RS06205 WP_083763094.1 1283476..1284540(-) (recA) [Halothermothrix orenii H 168]
TTGGCTAAAAACGAGAAGGAAAAAGCTCTGGAGATGGCTGTAAAACGTATAGAAAAACAATTTGGGCAGGGGTCTATTAT
GAAACTGGGAGAGGCTACTGCCCTTAATGTAGAAGTTATTCCAACAGGTGCTTTACCCCTTGATTTAGCATTAGGGGTAG
GGGGTGTTCCCAGGGGTAGAATTATTGAAATCTATGGACCTGAATCCTCGGGTAAGACTACTCTGGCTTTACACATAATT
GCTGAAGCCCAGAAACGCAACGGGGTTGCTGCTTTTATTGATGCTGAACATGCCCTTGATCCCAAATATTCAGAGAATCT
GGGGGTTAACATCGATAATTTATTGATATCACAGCCAAATAATGGTGAAGAAGCCCTGGAAATAGCCGAAGCCCTCGTGC
GCAGTAATGCCATCGATGTAATTGTTATAGATTCTGTTGCTGCTCTTGTTCCCAAGGCTGAACTGGATGGAGAAATGGGA
GATAGTCATGTTGGTTTACAGGCCCGGTTAATGTCCCAGGCCATGAGGAAATTATCGGGTGCTATCAGTAAATCAAAGAC
TGTCTGCATTTTTATTAACCAGATCAGAGAAAAGGTCGGGGTAATGTTTGGTAATCCCGAAACAACTCCAGGTGGACGAG
CCCTTAAATTTTATTCTTCAGTAAGAATGGAAATCAGAAAAACTCAGACCCTGAAAAATGGAGATGAAATAGTAGGGAGT
CAGACCAGGGTGAAAGTTGTTAAAAACAAAGTTGCTCCTCCATTCAGGCGGGCTATTTTTGATATTATGTATGGAACGGG
TATATCGACATCAGGATGTATCCTCGATATGGGGGTTGATACCGGAATTATTGACAGGGCTGGTTCCTGGTATTCCTATG
GTGATGAGCGTCTGGGACAGGGACGTGAAAATGCTAAAAACTTCCTTGAAGATAACCCGGATATTATGAAAGAAATTGAA
ATGAAGATTAAAGAACGGGTAGGTCTGGAAGTGGAGGATGAAGTTGCCTCAACTAAAGAAAATAAATCAACTGGAAAATC
GAAAGCTAAAGGTAAGAAAAAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.419

92.373

0.641
  recA Latilactobacillus sakei subsp. sakei 23K

63.557

96.893

0.616
  recA Streptococcus pneumoniae TIGR4

62.391

96.893

0.605
  recA Streptococcus pneumoniae Rx1

62.391

96.893

0.605
  recA Streptococcus pneumoniae D39

62.391

96.893

0.605
  recA Streptococcus pneumoniae R6

62.391

96.893

0.605
  recA Streptococcus mitis NCTC 12261

62.209

97.175

0.605
  recA Streptococcus mitis SK321

62.281

96.61

0.602
  recA Streptococcus mutans UA159

60.114

99.153

0.596
  recA Lactococcus lactis subsp. cremoris KW2

60.417

94.915

0.573
  recA Glaesserella parasuis strain SC1401

63.125

90.395

0.571
  recA Acinetobacter baylyi ADP1

59.587

95.763

0.571
  recA Acinetobacter baumannii D1279779

60.119

94.915

0.571
  recA Neisseria gonorrhoeae strain FA1090

60.909

93.22

0.568
  recA Neisseria gonorrhoeae MS11

60.909

93.22

0.568
  recA Neisseria gonorrhoeae MS11

60.909

93.22

0.568
  recA Streptococcus pyogenes NZ131

61.094

92.938

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.976

92.655

0.565
  recA Ralstonia pseudosolanacearum GMI1000

63.898

88.418

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.606

93.22

0.565
  recA Pseudomonas stutzeri DSM 10701

61.18

90.96

0.556
  recA Helicobacter pylori strain NCTC11637

60.308

91.808

0.554
  recA Helicobacter pylori 26695

60.308

91.808

0.554
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.25

90.395

0.554
  recA Vibrio cholerae strain A1552

61.25

90.395

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

91.525

0.551

Multiple sequence alignment