Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | EGX97_RS06340 | Genome accession | NZ_CP033841 |
| Coordinates | 1389002..1390186 (-) | Length | 394 a.a. |
| NCBI ID | WP_014483649.1 | Uniprot ID | A0A2K9BQ95 |
| Organism | Bifidobacterium breve strain FDAARGOS_561 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1386362..1428376 | 1389002..1390186 | within | 0 |
Gene organization within MGE regions
Location: 1386362..1428376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX97_RS06325 (EGX97_06335) | hpf | 1387021..1387683 (-) | 663 | WP_014483651.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| EGX97_RS06335 (EGX97_06345) | - | 1388406..1389005 (-) | 600 | WP_003830647.1 | regulatory protein RecX | - |
| EGX97_RS06340 (EGX97_06350) | recA | 1389002..1390186 (-) | 1185 | WP_014483649.1 | recombinase RecA | Machinery gene |
| EGX97_RS06345 (EGX97_06355) | - | 1390493..1390726 (-) | 234 | WP_003830645.1 | DUF3046 domain-containing protein | - |
| EGX97_RS06350 (EGX97_06360) | - | 1390833..1391351 (-) | 519 | WP_003830644.1 | helix-turn-helix domain-containing protein | - |
| EGX97_RS06355 (EGX97_06365) | - | 1391411..1391968 (-) | 558 | WP_003830643.1 | CinA family protein | - |
| EGX97_RS06360 (EGX97_06370) | pgsA | 1392069..1392704 (-) | 636 | WP_015438915.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| EGX97_RS06365 (EGX97_06375) | - | 1392883..1395738 (-) | 2856 | WP_003830641.1 | DNA translocase FtsK | - |
| EGX97_RS06370 (EGX97_06380) | - | 1395949..1396698 (+) | 750 | WP_033892489.1 | Fic family protein | - |
| EGX97_RS06375 (EGX97_06385) | miaA | 1396741..1397724 (-) | 984 | WP_003830639.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| EGX97_RS06380 (EGX97_06390) | miaB | 1397847..1399298 (-) | 1452 | WP_016462777.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| EGX97_RS06385 (EGX97_06395) | - | 1399371..1400171 (+) | 801 | WP_003830637.1 | GTP pyrophosphokinase family protein | - |
| EGX97_RS06390 (EGX97_06400) | - | 1400168..1401115 (-) | 948 | WP_003830636.1 | DMT family transporter | - |
| EGX97_RS06395 (EGX97_06405) | - | 1401238..1402059 (-) | 822 | WP_003830635.1 | Bax inhibitor-1/YccA family protein | - |
| EGX97_RS06400 (EGX97_06410) | - | 1402138..1402923 (+) | 786 | WP_003830634.1 | response regulator transcription factor | - |
| EGX97_RS06405 (EGX97_06415) | - | 1402986..1403624 (+) | 639 | WP_003830633.1 | GNAT family N-acetyltransferase | - |
| EGX97_RS06410 (EGX97_06420) | acnA | 1403743..1406442 (-) | 2700 | WP_032738324.1 | aconitate hydratase AcnA | - |
| EGX97_RS06415 (EGX97_06425) | - | 1406561..1409173 (-) | 2613 | WP_003830631.1 | cation-translocating P-type ATPase | - |
| EGX97_RS06420 (EGX97_06430) | - | 1409238..1409822 (-) | 585 | WP_003830630.1 | hypothetical protein | - |
| EGX97_RS06425 (EGX97_06435) | - | 1409834..1411093 (-) | 1260 | WP_003830629.1 | class I SAM-dependent RNA methyltransferase | - |
| EGX97_RS06430 (EGX97_06440) | - | 1411083..1411859 (-) | 777 | WP_003830628.1 | DUF3159 domain-containing protein | - |
| EGX97_RS06435 (EGX97_06445) | - | 1411875..1412720 (-) | 846 | WP_003830627.1 | DUF3710 domain-containing protein | - |
| EGX97_RS06440 (EGX97_06450) | - | 1412845..1413705 (+) | 861 | WP_003830626.1 | exodeoxyribonuclease III | - |
| EGX97_RS06445 (EGX97_06455) | - | 1414014..1416023 (-) | 2010 | WP_003830625.1 | ABC transporter ATP-binding protein | - |
| EGX97_RS06450 (EGX97_06460) | - | 1416046..1417050 (-) | 1005 | WP_003830624.1 | ABC transporter permease | - |
| EGX97_RS06455 (EGX97_06465) | - | 1417069..1417995 (-) | 927 | WP_003830623.1 | ABC transporter permease | - |
| EGX97_RS06460 (EGX97_06470) | - | 1418385..1420025 (-) | 1641 | WP_003830622.1 | ABC transporter substrate-binding protein | - |
| EGX97_RS06465 (EGX97_06475) | - | 1420279..1421298 (-) | 1020 | WP_003830621.1 | tyrosine recombinase XerC | - |
| EGX97_RS06470 (EGX97_06480) | - | 1421460..1422272 (+) | 813 | WP_003830620.1 | ABC transporter ATP-binding protein | - |
| EGX97_RS06475 (EGX97_06485) | - | 1422269..1425127 (+) | 2859 | WP_003830619.1 | ABC transporter permease | - |
| EGX97_RS06480 (EGX97_06490) | - | 1425380..1425637 (-) | 258 | WP_025263055.1 | DUF6725 family protein | - |
| EGX97_RS06485 (EGX97_06495) | - | 1425723..1426739 (-) | 1017 | WP_003830617.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| EGX97_RS06490 (EGX97_06500) | - | 1426733..1427713 (-) | 981 | WP_003830616.1 | prephenate dehydratase domain-containing protein | - |
| EGX97_RS06495 (EGX97_06505) | - | 1427772..1428212 (-) | 441 | WP_019727473.1 | alcohol dehydrogenase | - |
Sequence
Protein
Download Length: 394 a.a. Molecular weight: 41647.34 Da Isoelectric Point: 5.8556
>NTDB_id=326348 EGX97_RS06340 WP_014483649.1 1389002..1390186(-) (recA) [Bifidobacterium breve strain FDAARGOS_561]
MALETKPAQDPATETKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPVQNVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRL
DIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE
KVRQFLKDNPAITEEIENKVKAEFGLIGSADQFAEDEDAAAAAAVSEAAAADAAKDTKATAAPAAKSSRAKARS
MALETKPAQDPATETKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPVQNVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRL
DIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE
KVRQFLKDNPAITEEIENKVKAEFGLIGSADQFAEDEDAAAAAAVSEAAAADAAKDTKATAAPAAKSSRAKARS
Nucleotide
Download Length: 1185 bp
>NTDB_id=326348 EGX97_RS06340 WP_014483649.1 1389002..1390186(-) (recA) [Bifidobacterium breve strain FDAARGOS_561]
ATGGCACTTGAGACCAAGCCGGCCCAAGATCCGGCAACCGAGACCAAGCACGAGCTCGATCCCAAGCGCAAGGCGGCGCT
GGACACTGCTTTGGCGCAGGTCGAAAAAAGCTTCGGCAAGGGCTCGGCCATGCGCCTCGGCGATCAGCCCGTGCAAAATG
TCGAAGTAATCCCTACCGGTTCGCTCGCGCTCGACATGGCGTTGGGCATTGGCGGCCTGCCGAAGGGCCGCATCGTGGAA
ATCTATGGTCCCGAATCGTCCGGTAAAACCACGCTTGCCCTGCATGTGGTGGCCAATGCCCAGAAGAAGGGTGGCGTGGC
CGCATACATTGACGCCGAGCACGCGCTCGATCCGGCCTATGCTCGCAAACTTGGCGTGGACACTGATTCGCTTATCGTTT
CTCAGCCGGACAACGGCGAACAGGCTCTTGAGATTGCAGACATGCTGATTCGTTCTGGCGCGCTTGATGTCATCGTTATC
GATTCGGTGGCGGCTCTGGTGCCAAAGGCCGAGATCGAAGGCGAGATGGGAGACAGCCACGTCGGTTTGCAGGCCCGACT
CATGAGCCAGGCTCTGCGCAAGATGACCGGTGCCTTGGCCCAAGCAGGTACCACCGCCATCTTCATCAACCAGCTACGCG
AAAAGATCGGCGTGTTCTTCGGTAATCCCGAAACCACTACCGGTGGCAAGGCTCTGAAGTTCTATGCCTCTGTGCGTCTT
GACATTCGCCGTATCCAGACCTTGAAGAACGGTGATGAAGCGGTGGGCAACCGTACGCGCGTCAAGGTGGTCAAGAACAA
GATGGCCCCGCCCTTCAAGTCCGCCGAATTCGACATGCTTTACGGCGAAGGTATCTCCCGCGAAGGTTCGGTCATCGACA
TGGCCCAACAGGTCGGCGTGGTCAAGAAGTCCGGCTCGTGGTTCACCTATGAGGGCGACCAGCTTGGTCAGGGTCGAGAG
AAGGTTCGTCAGTTCCTCAAGGACAACCCGGCCATCACCGAAGAGATTGAAAACAAGGTCAAGGCAGAATTTGGTTTGAT
CGGTTCCGCCGATCAGTTTGCCGAAGACGAAGACGCTGCTGCAGCTGCCGCAGTCAGCGAGGCCGCTGCGGCCGATGCCG
CCAAGGACACCAAGGCCACTGCAGCGCCTGCCGCCAAGTCGTCTCGCGCCAAGGCCCGATCATGA
ATGGCACTTGAGACCAAGCCGGCCCAAGATCCGGCAACCGAGACCAAGCACGAGCTCGATCCCAAGCGCAAGGCGGCGCT
GGACACTGCTTTGGCGCAGGTCGAAAAAAGCTTCGGCAAGGGCTCGGCCATGCGCCTCGGCGATCAGCCCGTGCAAAATG
TCGAAGTAATCCCTACCGGTTCGCTCGCGCTCGACATGGCGTTGGGCATTGGCGGCCTGCCGAAGGGCCGCATCGTGGAA
ATCTATGGTCCCGAATCGTCCGGTAAAACCACGCTTGCCCTGCATGTGGTGGCCAATGCCCAGAAGAAGGGTGGCGTGGC
CGCATACATTGACGCCGAGCACGCGCTCGATCCGGCCTATGCTCGCAAACTTGGCGTGGACACTGATTCGCTTATCGTTT
CTCAGCCGGACAACGGCGAACAGGCTCTTGAGATTGCAGACATGCTGATTCGTTCTGGCGCGCTTGATGTCATCGTTATC
GATTCGGTGGCGGCTCTGGTGCCAAAGGCCGAGATCGAAGGCGAGATGGGAGACAGCCACGTCGGTTTGCAGGCCCGACT
CATGAGCCAGGCTCTGCGCAAGATGACCGGTGCCTTGGCCCAAGCAGGTACCACCGCCATCTTCATCAACCAGCTACGCG
AAAAGATCGGCGTGTTCTTCGGTAATCCCGAAACCACTACCGGTGGCAAGGCTCTGAAGTTCTATGCCTCTGTGCGTCTT
GACATTCGCCGTATCCAGACCTTGAAGAACGGTGATGAAGCGGTGGGCAACCGTACGCGCGTCAAGGTGGTCAAGAACAA
GATGGCCCCGCCCTTCAAGTCCGCCGAATTCGACATGCTTTACGGCGAAGGTATCTCCCGCGAAGGTTCGGTCATCGACA
TGGCCCAACAGGTCGGCGTGGTCAAGAAGTCCGGCTCGTGGTTCACCTATGAGGGCGACCAGCTTGGTCAGGGTCGAGAG
AAGGTTCGTCAGTTCCTCAAGGACAACCCGGCCATCACCGAAGAGATTGAAAACAAGGTCAAGGCAGAATTTGGTTTGAT
CGGTTCCGCCGATCAGTTTGCCGAAGACGAAGACGCTGCTGCAGCTGCCGCAGTCAGCGAGGCCGCTGCGGCCGATGCCG
CCAAGGACACCAAGGCCACTGCAGCGCCTGCCGCCAAGTCGTCTCGCGCCAAGGCCCGATCATGA
Similar proteins
Only experimentally validated proteins are listed.