Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CCEL_RS03440 Genome accession   NC_011898
Coordinates   781418..782461 (+) Length   347 a.a.
NCBI ID   WP_015924225.1    Uniprot ID   -
Organism   Ruminiclostridium cellulolyticum H10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 776418..787461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCEL_RS03425 (Ccel_0673) - 777149..778156 (-) 1008 WP_015924222.1 SDR family oxidoreductase -
  CCEL_RS03430 (Ccel_0674) - 778431..779678 (+) 1248 WP_015924223.1 competence/damage-inducible protein A -
  CCEL_RS03435 (Ccel_0675) murJ 779732..781324 (+) 1593 WP_041706510.1 murein biosynthesis integral membrane protein MurJ -
  CCEL_RS03440 (Ccel_0676) recA 781418..782461 (+) 1044 WP_015924225.1 recombinase RecA Machinery gene
  CCEL_RS03445 (Ccel_0677) - 782581..783234 (+) 654 WP_015924226.1 regulatory protein RecX -
  CCEL_RS03450 (Ccel_0678) rimO 783365..784705 (+) 1341 WP_015924227.1 30S ribosomal protein S12 methylthiotransferase RimO -
  CCEL_RS03455 (Ccel_0679) pgsA 784689..785309 (+) 621 WP_015924228.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CCEL_RS03460 (Ccel_0680) fapR 785585..786169 (+) 585 WP_015924229.1 transcription factor FapR -
  CCEL_RS03465 (Ccel_0681) plsX 786229..787254 (+) 1026 WP_174258518.1 phosphate acyltransferase PlsX -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37712.25 Da        Isoelectric Point: 5.3688

>NTDB_id=32623 CCEL_RS03440 WP_015924225.1 781418..782461(+) (recA) [Ruminiclostridium cellulolyticum H10]
MLEKRKALEMALGQIEKQFGKGAVMKLGENSHMNVEIIPTGSMSLDLALGVGGVPRGRIVEIFGPESSGKTTVALHIIAE
AQKAGGEAAFIDAEHALDPVYAKKLGVDIENLIVSQPDTGEQALEITEALVRSGAIDVIVVDSVAALVPKAEIDGEMGDS
HIGLQARLMSQALRKLAGVISKSRTTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIEAIKQSNEVVGNRT
RVKVVKNKVAPPFKEAEFDIVYGEGISREGSILDIAVNMEIVNKSGAWFSYNSQRIGQGRENAKQYLKENPAMCSEIEKL
VRSNFTVTAPQTEEPEENEEVELDKIK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=32623 CCEL_RS03440 WP_015924225.1 781418..782461(+) (recA) [Ruminiclostridium cellulolyticum H10]
GTGTTAGAAAAGAGAAAAGCATTAGAGATGGCTTTGGGCCAGATAGAGAAGCAGTTTGGTAAAGGTGCGGTAATGAAGTT
GGGCGAAAATTCCCATATGAATGTAGAGATTATTCCTACAGGGTCAATGAGTCTTGATCTGGCACTCGGAGTTGGAGGAG
TTCCCAGAGGAAGAATAGTTGAAATTTTTGGGCCGGAGTCATCCGGTAAAACAACTGTTGCACTTCATATTATTGCAGAG
GCTCAAAAGGCCGGAGGTGAAGCTGCTTTTATAGACGCAGAACACGCCCTTGATCCTGTGTATGCAAAGAAACTTGGGGT
TGATATAGAAAATCTGATAGTGTCACAGCCTGATACAGGTGAACAGGCTCTTGAGATTACAGAAGCACTTGTAAGAAGTG
GTGCAATAGATGTTATTGTAGTTGACTCTGTTGCGGCTCTTGTACCTAAGGCAGAAATCGACGGAGAAATGGGTGATTCC
CATATAGGGTTACAAGCAAGGCTGATGTCTCAGGCACTTAGAAAATTAGCCGGTGTTATCAGTAAATCAAGGACAACAGC
TATATTTATTAATCAGCTTCGTGAGAAGGTCGGTATAATGTTCGGTAATCCTGAAACTACACCGGGAGGTAGGGCATTAA
AATTCTATTCTTCCGTAAGACTTGATGTCAGAAGGATAGAAGCGATTAAGCAGTCTAACGAAGTTGTAGGTAACAGAACA
AGAGTAAAGGTTGTAAAGAACAAAGTTGCACCTCCTTTCAAAGAAGCAGAGTTTGATATTGTCTATGGAGAGGGTATATC
AAGAGAAGGCAGTATACTTGATATTGCTGTAAATATGGAAATTGTTAACAAAAGCGGTGCGTGGTTCTCTTATAATAGTC
AGCGTATAGGCCAGGGTCGTGAAAATGCAAAACAATATCTTAAAGAAAATCCCGCTATGTGCAGTGAAATAGAGAAACTA
GTCAGAAGTAACTTTACTGTAACTGCTCCGCAGACTGAAGAACCGGAAGAAAATGAAGAAGTTGAACTCGATAAAATAAA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

70.769

93.66

0.663
  recA Streptococcus pneumoniae Rx1

61.667

100

0.64
  recA Streptococcus pneumoniae TIGR4

61.667

100

0.64
  recA Streptococcus pneumoniae R6

61.667

100

0.64
  recA Streptococcus pneumoniae D39

61.667

100

0.64
  recA Neisseria gonorrhoeae MS11

68.012

92.795

0.631
  recA Neisseria gonorrhoeae MS11

68.012

92.795

0.631
  recA Neisseria gonorrhoeae strain FA1090

68.012

92.795

0.631
  recA Streptococcus mutans UA159

63.112

100

0.631
  recA Vibrio cholerae strain A1552

68.339

91.931

0.628
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.339

91.931

0.628
  recA Latilactobacillus sakei subsp. sakei 23K

64.012

97.695

0.625
  recA Helicobacter pylori strain NCTC11637

63.158

98.559

0.622
  recA Acinetobacter baylyi ADP1

63.905

97.406

0.622
  recA Helicobacter pylori 26695

62.865

98.559

0.62
  recA Acinetobacter baumannii D1279779

63.314

97.406

0.617
  recA Streptococcus mitis NCTC 12261

61.318

100

0.617
  recA Streptococcus mitis SK321

61.318

100

0.617
  recA Streptococcus pyogenes NZ131

65.138

94.236

0.614
  recA Lactococcus lactis subsp. cremoris KW2

65.231

93.66

0.611
  recA Pseudomonas stutzeri DSM 10701

64.242

95.101

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.134

94.813

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.242

97.695

0.608
  recA Ralstonia pseudosolanacearum GMI1000

66.242

90.49

0.599
  recA Glaesserella parasuis strain SC1401

63.158

93.084

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.75

92.219

0.588

Multiple sequence alignment