Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A2CP1_RS20680 Genome accession   NC_011891
Coordinates   4592926..4594002 (+) Length   358 a.a.
NCBI ID   WP_015935146.1    Uniprot ID   B8J9N8
Organism   Anaeromyxobacter dehalogenans 2CP-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4587926..4599002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2CP1_RS20655 (A2cp1_4103) thpR 4588984..4589568 (+) 585 WP_015935141.1 RNA 2',3'-cyclic phosphodiesterase -
  A2CP1_RS20660 (A2cp1_4104) - 4589635..4590804 (-) 1170 WP_015935142.1 cache domain-containing protein -
  A2CP1_RS20665 (A2cp1_4105) - 4590820..4591023 (-) 204 WP_015935143.1 hypothetical protein -
  A2CP1_RS20670 (A2cp1_4106) - 4591269..4591862 (+) 594 WP_015935144.1 YqgE/AlgH family protein -
  A2CP1_RS20675 (A2cp1_4107) - 4592063..4592653 (-) 591 WP_015935145.1 DUF2378 family protein -
  A2CP1_RS20680 (A2cp1_4108) recA 4592926..4594002 (+) 1077 WP_015935146.1 recombinase RecA Machinery gene
  A2CP1_RS20685 (A2cp1_4109) - 4594220..4595671 (+) 1452 WP_015935147.1 LETM1 domain-containing protein -
  A2CP1_RS20690 (A2cp1_4110) - 4595823..4597370 (-) 1548 WP_015935148.1 HEAT repeat domain-containing protein -
  A2CP1_RS20695 (A2cp1_4111) - 4597401..4598048 (-) 648 WP_015935149.1 hypothetical protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38549.25 Da        Isoelectric Point: 7.0026

>NTDB_id=32610 A2CP1_RS20680 WP_015935146.1 4592926..4594002(+) (recA) [Anaeromyxobacter dehalogenans 2CP-1]
MPVGPEKEKAIELAVASIEKAFGKGSIMRLGNEDALVKDVQAVSTGAVSLDIALGVGGFPRGRIIEIYGPESSGKTTLAL
HAIAEAQRRGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDSGEQALEIVETLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTIAKSATIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSV
IGNRTRVKVVKNKVAPPFKEVEFDIMYGQGISREGDVLDLASNENIVEKSGTWFSFGGERIGQGREQAKAFFREHPEILQ
QIESRLFEKFGIHRGPVAVPSPPAEEPVEERKPRAKAK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=32610 A2CP1_RS20680 WP_015935146.1 4592926..4594002(+) (recA) [Anaeromyxobacter dehalogenans 2CP-1]
ATGCCCGTGGGACCGGAGAAGGAGAAGGCGATCGAGCTGGCCGTCGCGTCGATCGAGAAGGCGTTCGGCAAGGGCTCGAT
CATGCGCCTCGGCAACGAGGACGCGCTGGTGAAGGACGTCCAGGCGGTCTCGACCGGCGCGGTCTCGCTGGACATCGCGC
TCGGCGTGGGCGGCTTCCCGCGCGGCCGCATCATCGAGATCTACGGCCCGGAGTCCTCCGGCAAGACCACGCTGGCGCTG
CACGCCATCGCCGAGGCGCAGCGGCGCGGCGGCATCGCCGCGTTCGTGGACGCCGAGCACGCGCTCGACGTGGGCTACGC
CCGCAAGCTGGGCGTGCGCACCGACGACCTGCTCATCTCGCAGCCCGACAGCGGCGAGCAGGCGCTCGAGATCGTCGAGA
CCCTGGTCCGCTCCGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCGGCGCTCGTGCCCAAGGCCGAGCTCGAGGGC
GAGATGGGCGACGCGCACATGGGCGTGCAGGCCCGCCTCATGAGCCAGGCGCTCCGCAAGCTCACCGGCACCATCGCGAA
GTCCGCGACCATCGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGGAACCCGGAGACCACCACCG
GCGGCAACGCGCTCAAGTTCTACGCGTCGCAGCGGCTCGACATCCGCCGCATCGGGGCCATCAAGGACGGCGACTCGGTC
ATCGGCAACCGCACCCGCGTGAAGGTGGTGAAGAACAAGGTCGCCCCGCCGTTCAAGGAGGTCGAGTTCGACATCATGTA
CGGCCAGGGCATCAGCCGCGAGGGCGACGTGCTCGACCTCGCCTCGAACGAGAACATCGTCGAGAAGAGCGGCACCTGGT
TCAGCTTCGGCGGCGAGCGCATCGGCCAGGGGCGCGAGCAGGCCAAGGCGTTCTTCCGCGAGCACCCCGAGATCCTCCAG
CAGATCGAGTCGCGCCTGTTCGAGAAGTTCGGCATCCACCGCGGCCCGGTGGCCGTCCCTTCCCCGCCGGCGGAGGAGCC
GGTCGAGGAGCGGAAGCCCCGCGCCAAGGCGAAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8J9N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.524

87.989

0.612
  recA Glaesserella parasuis strain SC1401

66.462

90.782

0.603
  recA Acinetobacter baumannii D1279779

63.05

95.251

0.601
  recA Streptococcus pneumoniae Rx1

58.564

100

0.592
  recA Streptococcus pneumoniae TIGR4

58.564

100

0.592
  recA Streptococcus pneumoniae R6

58.564

100

0.592
  recA Streptococcus pneumoniae D39

58.564

100

0.592
  recA Vibrio cholerae strain A1552

65.839

89.944

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.839

89.944

0.592
  recA Pseudomonas stutzeri DSM 10701

64.923

90.782

0.589
  recA Helicobacter pylori strain NCTC11637

60.519

96.927

0.587
  recA Acinetobacter baylyi ADP1

64.815

90.503

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.651

92.737

0.581
  recA Helicobacter pylori 26695

59.942

96.927

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.087

90.223

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.11

91.62

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

62.538

92.458

0.578
  recA Neisseria gonorrhoeae MS11

63.665

89.944

0.573
  recA Neisseria gonorrhoeae strain FA1090

63.665

89.944

0.573
  recA Neisseria gonorrhoeae MS11

63.665

89.944

0.573
  recA Streptococcus mitis SK321

58.96

96.648

0.57
  recA Streptococcus mitis NCTC 12261

60.119

93.855

0.564
  recA Streptococcus pyogenes NZ131

60.542

92.737

0.561
  recA Streptococcus mutans UA159

60.06

93.017

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.394

92.179

0.547
  recA Lactococcus lactis subsp. cremoris KW2

58.258

93.017

0.542

Multiple sequence alignment