Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HAPS_RS05770 Genome accession   NC_011852
Coordinates   1166410..1167528 (-) Length   372 a.a.
NCBI ID   WP_015939658.1    Uniprot ID   B8F639
Organism   Glaesserella parasuis SH0165     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1161410..1172528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAPS_RS05720 (HAPS_1176) ubiK 1162745..1163005 (-) 261 WP_010786182.1 ubiquinone biosynthesis accessory factor UbiK -
  HAPS_RS05745 (HAPS_1181) aroE 1163690..1164508 (-) 819 WP_015939654.1 shikimate dehydrogenase -
  HAPS_RS05750 (HAPS_1182) - 1164512..1165066 (-) 555 WP_010786180.1 Sua5/YciO/YrdC/YwlC family protein -
  HAPS_RS05755 (HAPS_1183) - 1165066..1165596 (-) 531 WP_015939655.1 type I DNA topoisomerase -
  HAPS_RS05760 (HAPS_1184) yqfB 1165604..1165909 (-) 306 WP_015939656.1 N(4)-acetylcytidine aminohydrolase -
  HAPS_RS05765 (HAPS_1185) recX 1165902..1166357 (-) 456 WP_015939657.1 recombination regulator RecX -
  HAPS_RS05770 (HAPS_1186) recA 1166410..1167528 (-) 1119 WP_015939658.1 recombinase RecA Machinery gene
  HAPS_RS05775 (HAPS_1187) - 1167661..1168266 (-) 606 WP_015939659.1 aminotransferase class IV family protein -
  HAPS_RS05780 (HAPS_1188) - 1168244..1169215 (-) 972 WP_015939660.1 aminodeoxychorismate synthase component I -
  HAPS_RS11560 (HAPS_1189) - 1169248..1169445 (+) 198 WP_075592578.1 cation transporter -
  HAPS_RS05790 (HAPS_1191) tehB 1169666..1170529 (+) 864 WP_015939662.1 SAM-dependent methyltransferase TehB -
  HAPS_RS05795 (HAPS_1192) dusA 1170805..1171776 (+) 972 WP_015939663.1 tRNA dihydrouridine(20/20a) synthase DusA -
  HAPS_RS12685 - 1171942..1172025 (+) 84 WP_416037117.1 hypothetical protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 40314.00 Da        Isoelectric Point: 4.7573

>NTDB_id=32572 HAPS_RS05770 WP_015939658.1 1166410..1167528(-) (recA) [Glaesserella parasuis SH0165]
MAENKKSSKNNTVIKQVPPEQKQQALEAALAQIEKQFGKGSIMKLGQTEQLDIESVSTGSLGLDLALGIGGLPMGRIVEI
YGPESSGKTTLTLSLIAQAQKGNKTCAFIDAEHALDPVYARNLGVNTDDLLISQPDNGEQALEICDALVRSGAVDVIIVD
SVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKNTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD
IRRCGVVKDGDEIIGSETKVKVVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIKKSGAWFSYDGTKIGQGKNN
AVKWLKENPEIADKLEQEIRNTLASNPNSLLKVTASDSIDESDVEEFNEEEL

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=32572 HAPS_RS05770 WP_015939658.1 1166410..1167528(-) (recA) [Glaesserella parasuis SH0165]
ATGGCTGAGAATAAAAAATCTTCAAAAAACAATACCGTCATTAAACAAGTTCCACCAGAACAGAAACAACAAGCCTTAGA
AGCGGCACTAGCTCAAATTGAAAAACAATTTGGTAAAGGCTCTATTATGAAATTAGGGCAGACTGAGCAATTAGATATTG
AGTCTGTTTCAACAGGCTCACTAGGGCTAGACCTTGCTTTAGGTATTGGTGGCTTGCCAATGGGGCGTATTGTTGAAATC
TATGGGCCAGAATCGTCAGGTAAGACAACATTAACACTTTCTTTAATTGCTCAAGCTCAAAAAGGCAATAAAACCTGTGC
TTTTATTGACGCTGAACACGCTTTAGATCCTGTCTATGCTCGCAATTTAGGGGTAAATACAGATGATTTATTGATTTCTC
AACCAGATAATGGTGAACAAGCTCTTGAAATCTGTGATGCGTTAGTTCGTTCAGGGGCAGTTGATGTTATTATTGTGGAC
TCTGTCGCTGCACTTACGCCAAAAGCTGAAATTGAAGGGGATATGGGCGACTCGCATATGGGCTTACAAGCACGTTTAAT
GTCACAAGCGTTGCGTAAACTCACTGCAAATATCAAAAATACCAACTGTTTAGTGGTCTTTATTAACCAAATCCGTATGA
AAATTGGCGTAATGTTTGGTAATCCAGAAACGACAACAGGCGGTAATGCATTGAAATTCTATGCCTCTGTTCGTTTAGAT
ATTCGTCGTTGCGGTGTAGTCAAAGATGGCGATGAAATTATTGGTAGTGAAACCAAAGTAAAAGTGGTGAAAAACAAAGT
TGCACCGCCATTCCGTGAAGTACAATTTGATATTATGTACGGCGAAGGAATTTCTCGTATGAACGAACTACTGATTTTAG
CTGAAGCAAACGGCTTTATTAAGAAATCAGGGGCGTGGTTCTCTTATGATGGAACGAAAATTGGACAAGGTAAAAATAAT
GCAGTGAAATGGTTAAAAGAGAACCCTGAAATTGCAGATAAACTCGAACAAGAAATCCGAAATACACTGGCTTCAAACCC
AAATAGCCTATTAAAAGTAACGGCAAGCGACAGTATCGACGAGAGCGATGTCGAAGAGTTTAACGAAGAAGAACTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F639

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

97.849

100

0.978
  recA Pseudomonas stutzeri DSM 10701

71.345

91.935

0.656
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.231

94.355

0.653
  recA Vibrio cholerae strain A1552

69.231

94.355

0.653
  recA Acinetobacter baylyi ADP1

69.298

91.935

0.637
  recA Acinetobacter baumannii D1279779

71.605

87.097

0.624
  recA Neisseria gonorrhoeae strain FA1090

71.118

86.559

0.616
  recA Neisseria gonorrhoeae MS11

71.118

86.559

0.616
  recA Neisseria gonorrhoeae MS11

71.118

86.559

0.616
  recA Ralstonia pseudosolanacearum GMI1000

68.389

88.441

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.759

89.247

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.337

87.634

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.908

90.591

0.57
  recA Streptococcus mitis NCTC 12261

60.588

91.398

0.554
  recA Streptococcus mitis SK321

60

91.398

0.548
  recA Bacillus subtilis subsp. subtilis str. 168

61.818

88.71

0.548
  recA Streptococcus mutans UA159

59.706

91.398

0.546
  recA Streptococcus pneumoniae D39

61.468

87.903

0.54
  recA Streptococcus pneumoniae TIGR4

61.468

87.903

0.54
  recA Streptococcus pneumoniae Rx1

61.468

87.903

0.54
  recA Streptococcus pneumoniae R6

61.468

87.903

0.54
  recA Helicobacter pylori 26695

61.28

88.172

0.54
  recA Streptococcus pyogenes NZ131

58.824

91.398

0.538
  recA Helicobacter pylori strain NCTC11637

60.976

88.172

0.538
  recA Lactococcus lactis subsp. cremoris KW2

56.977

92.473

0.527
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

86.29

0.516

Multiple sequence alignment