Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EGX68_RS05325 Genome accession   NZ_CP033735
Coordinates   1023293..1024345 (+) Length   350 a.a.
NCBI ID   WP_019468710.1    Uniprot ID   A0A0M2NWC3
Organism   Staphylococcus cohnii strain FDAARGOS_538     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1018293..1029345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX68_RS05300 (EGX68_05300) - 1018959..1019663 (+) 705 WP_019468705.1 SDR family NAD(P)-dependent oxidoreductase -
  EGX68_RS05305 (EGX68_05305) - 1019861..1020691 (+) 831 WP_019468706.1 DUF3388 domain-containing protein -
  EGX68_RS05310 (EGX68_05310) - 1020723..1021115 (+) 393 WP_019468707.1 RodZ family helix-turn-helix domain-containing protein -
  EGX68_RS05315 (EGX68_05315) pgsA 1021168..1021746 (+) 579 WP_019468708.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EGX68_RS05320 (EGX68_05320) - 1021976..1023121 (+) 1146 WP_019468709.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  EGX68_RS05325 (EGX68_05325) recA 1023293..1024345 (+) 1053 WP_019468710.1 recombinase RecA Machinery gene
  EGX68_RS05330 (EGX68_05330) rny 1024679..1026238 (+) 1560 WP_019468711.1 ribonuclease Y -
  EGX68_RS05335 (EGX68_05335) - 1026482..1026697 (-) 216 WP_019468712.1 hypothetical protein -
  EGX68_RS05340 (EGX68_05340) - 1026864..1027655 (+) 792 WP_019468713.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38040.15 Da        Isoelectric Point: 5.1162

>NTDB_id=325181 EGX68_RS05325 WP_019468710.1 1023293..1024345(+) (recA) [Staphylococcus cohnii strain FDAARGOS_538]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNEARKVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDMMYGKGISKEGELIDLGVENEIVNKSGAWYSYNGERMGQGKENVKLYLKENPKVKQEIDQ
KLREKLGIFDGDVDEKEEEAPATLFDEKDE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=325181 EGX68_RS05325 WP_019468710.1 1023293..1024345(+) (recA) [Staphylococcus cohnii strain FDAARGOS_538]
TTGGATAATGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ACTTGGTGATAATGAAGCACGCAAAGTTTCTAGTGTATCAAGTGGTTCAGTAACTCTAGATAACGCATTAGGGGTTGGTG
GTTACCCTAAAGGTAGAATTATAGAAATATACGGACCAGAAAGTTCCGGTAAAACAACTGTTGCATTACATGCCATAGCT
GAAGTACAAAAAAATGGTGGCATTGCTGCATTTATTGATGCTGAACATGCTTTAGACCCAGTTTATGCTGAAGCATTAGG
TGTTGATATTCAAAATTTATATTTGTCTCAACCAGATCATGGTGAACAAGGCTTAGAAATTGCTGAAGCATTTGTTAGAA
GTGGTGCGGTAGATATTGTTGTTGTCGACTCAGTAGCTGCGTTAACACCGAAAGCTGAAATTGAAGGTGAAATGGGCGAT
ACACATGTCGGTTTACAAGCGCGTTTAATGTCACAAGCACTACGTAAATTGTCTGGCGCTATTTCTAAATCAAATACAAC
TGCTGTATTTATAAATCAAATTCGTGAAAAAGTTGGTGTTATGTTTGGGAATCCTGAAACGACACCAGGTGGACGTGCAT
TGAAATTCTATAGTTCAGTGCGTTTAGAAGTTCGTCGTGCAGAACAGTTGAAACAAGGCCAAGAAATTGTTGGTAACAGA
ACAAAAATTAAAGTGGTAAAAAACAAAGTAGCTCCTCCATTTAGAGTGGCAGAAGTTGATATGATGTACGGTAAAGGCAT
CTCCAAAGAAGGAGAGCTCATTGATCTTGGTGTAGAAAATGAAATCGTCAATAAATCGGGTGCTTGGTATTCTTACAATG
GTGAACGTATGGGTCAAGGTAAAGAAAACGTTAAATTATATTTAAAAGAAAATCCAAAAGTTAAACAAGAAATCGATCAA
AAATTACGAGAAAAACTTGGTATTTTCGATGGTGACGTTGATGAAAAAGAAGAAGAAGCACCTGCTACACTTTTTGATGA
AAAAGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2NWC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.074

93.143

0.709
  recA Latilactobacillus sakei subsp. sakei 23K

69.501

97.429

0.677
  recA Streptococcus mutans UA159

64

100

0.64
  recA Streptococcus pneumoniae R6

65.396

97.429

0.637
  recA Streptococcus pneumoniae Rx1

65.396

97.429

0.637
  recA Streptococcus pneumoniae D39

65.396

97.429

0.637
  recA Streptococcus pneumoniae TIGR4

65.396

97.429

0.637
  recA Streptococcus pyogenes NZ131

67.781

94

0.637
  recA Neisseria gonorrhoeae MS11

64.162

98.857

0.634
  recA Neisseria gonorrhoeae strain FA1090

64.162

98.857

0.634
  recA Neisseria gonorrhoeae MS11

64.162

98.857

0.634
  recA Streptococcus mitis NCTC 12261

64.723

98

0.634
  recA Acinetobacter baylyi ADP1

64.14

98

0.629
  recA Streptococcus mitis SK321

66.066

95.143

0.629
  recA Lactococcus lactis subsp. cremoris KW2

66.163

94.571

0.626
  recA Acinetobacter baumannii D1279779

62.644

99.429

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.265

98

0.62
  recA Helicobacter pylori 26695

64.329

93.714

0.603
  recA Helicobacter pylori strain NCTC11637

64.024

93.714

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.11

93.143

0.597
  recA Vibrio cholerae strain A1552

64.11

93.143

0.597
  recA Ralstonia pseudosolanacearum GMI1000

65.815

89.429

0.589
  recA Pseudomonas stutzeri DSM 10701

62.27

93.143

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

94.571

0.574
  recA Glaesserella parasuis strain SC1401

61.801

92

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

91.429

0.554

Multiple sequence alignment