Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CAGG_RS08660 Genome accession   NC_011831
Coordinates   2135869..2136924 (-) Length   351 a.a.
NCBI ID   WP_015940507.1    Uniprot ID   B8GAQ9
Organism   Chloroflexus aggregans DSM 9485     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2130869..2141924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAGG_RS20625 (Cagg_1742) tnpA 2131382..2131624 (-) 243 WP_015940502.1 IS200/IS605 family transposase -
  CAGG_RS08645 (Cagg_1743) - 2131761..2133404 (-) 1644 WP_015940503.1 CTP synthase -
  CAGG_RS08650 (Cagg_1744) - 2133627..2134298 (-) 672 WP_015940504.1 MBL fold metallo-hydrolase -
  CAGG_RS08655 (Cagg_1746) - 2135115..2135780 (-) 666 WP_015940506.1 regulatory protein RecX -
  CAGG_RS08660 (Cagg_1747) recA 2135869..2136924 (-) 1056 WP_015940507.1 recombinase RecA Machinery gene
  CAGG_RS08665 (Cagg_1748) - 2137314..2137805 (+) 492 WP_015940508.1 DUF427 domain-containing protein -
  CAGG_RS08670 (Cagg_1749) - 2137893..2139509 (+) 1617 WP_015940509.1 ABC transporter substrate-binding protein -
  CAGG_RS08675 (Cagg_1750) - 2139584..2140408 (+) 825 WP_015940510.1 ABC transporter permease -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37586.33 Da        Isoelectric Point: 5.1725

>NTDB_id=32516 CAGG_RS08660 WP_015940507.1 2135869..2136924(-) (recA) [Chloroflexus aggregans DSM 9485]
MAITPEKEKALAAAMAQIDRKFGKGSIMKMGEVGGRLAIEAIPTGSIALDIALGIGGVPRGRVIEIFGPESSGKTTLAQH
IIAEAQKMGGVGAFIDAEHAFDPVYAARCGVNISDLLVSQPDTGEQALEICEMLVRSNAVDVIVIDSVAALVPRAEIEGD
MGDSMPGMQARLMSQALRKLSGAISKSRAVVIFINQLRMKIGVMFGSPETTTGGQALKFYASVRLDIRRIETLKQGQEAI
GSRVRVKVIKNKVAPPFRQAEFDILANEGISREGNIIDIGTELGIIRKSGAWFYLGEDRLGQGRENVREFLKNNPALTDE
IERLIKAQALTNPSAIAPSADIGDDDGVFEE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=32516 CAGG_RS08660 WP_015940507.1 2135869..2136924(-) (recA) [Chloroflexus aggregans DSM 9485]
ATGGCAATTACCCCGGAAAAAGAAAAGGCACTCGCGGCGGCGATGGCGCAGATCGATCGCAAATTTGGTAAAGGCTCCAT
CATGAAGATGGGGGAGGTTGGGGGTCGGCTGGCTATCGAAGCTATTCCCACCGGTTCGATTGCACTGGACATTGCGCTTG
GCATTGGTGGTGTACCGCGTGGGCGTGTGATCGAAATCTTTGGCCCCGAGAGCAGCGGCAAAACCACTCTTGCCCAACAC
ATCATCGCCGAAGCACAAAAGATGGGCGGAGTAGGTGCCTTCATCGACGCCGAGCATGCCTTTGATCCAGTGTACGCTGC
CCGTTGTGGTGTCAACATCAGTGATCTGTTGGTATCACAACCCGACACCGGCGAACAAGCACTCGAAATCTGTGAAATGC
TGGTTCGCTCGAATGCGGTCGACGTGATCGTGATTGACTCGGTTGCCGCCCTCGTGCCGCGGGCCGAAATCGAGGGCGAC
ATGGGCGACTCGATGCCCGGTATGCAGGCGCGTCTGATGAGTCAAGCCTTGCGTAAGCTCTCCGGTGCCATCAGTAAAAG
TCGTGCCGTCGTCATTTTTATCAACCAGTTGCGGATGAAGATCGGTGTCATGTTCGGTTCACCGGAAACTACTACCGGTG
GTCAGGCACTGAAGTTTTACGCATCGGTACGGCTTGATATTCGGCGGATTGAAACGCTCAAACAAGGCCAAGAGGCGATC
GGCTCACGGGTTCGCGTTAAGGTGATCAAAAACAAAGTCGCTCCTCCCTTCCGGCAGGCCGAATTCGATATTCTGGCGAA
CGAAGGTATCTCGCGCGAGGGTAACATCATCGATATCGGTACCGAGTTGGGGATCATCCGCAAGAGTGGCGCATGGTTTT
ACCTCGGTGAGGATCGTCTCGGACAGGGGCGCGAAAATGTGCGCGAGTTTCTCAAGAATAATCCGGCGCTGACGGATGAA
ATCGAGCGCCTGATTAAAGCGCAAGCGTTAACTAATCCATCCGCAATTGCACCGAGTGCCGACATTGGCGATGACGATGG
TGTCTTCGAGGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8GAQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

62.974

97.721

0.615
  recA Neisseria gonorrhoeae MS11

65.846

92.593

0.61
  recA Neisseria gonorrhoeae MS11

65.846

92.593

0.61
  recA Neisseria gonorrhoeae strain FA1090

65.846

92.593

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

65.732

91.453

0.601
  recA Helicobacter pylori strain NCTC11637

61.404

97.436

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

91.453

0.598
  recA Glaesserella parasuis strain SC1401

59.829

100

0.598
  recA Helicobacter pylori 26695

61.111

97.436

0.595
  recA Ralstonia pseudosolanacearum GMI1000

64.241

90.028

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.28

93.447

0.573
  recA Acinetobacter baylyi ADP1

59.701

95.442

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.187

97.436

0.567
  recA Vibrio cholerae strain A1552

58.187

97.436

0.567
  recA Acinetobacter baumannii D1279779

60.308

92.593

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

59.317

91.738

0.544
  recA Streptococcus mitis NCTC 12261

56.047

96.581

0.541
  recA Lactococcus lactis subsp. cremoris KW2

55.786

96.011

0.536
  recA Streptococcus pyogenes NZ131

57.187

93.162

0.533
  recA Streptococcus mitis SK321

56.575

93.162

0.527
  recA Streptococcus pneumoniae D39

56.269

93.162

0.524
  recA Streptococcus pneumoniae TIGR4

56.269

93.162

0.524
  recA Streptococcus pneumoniae R6

56.269

93.162

0.524
  recA Streptococcus mutans UA159

56.269

93.162

0.524
  recA Streptococcus pneumoniae Rx1

56.269

93.162

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.413

90.313

0.519

Multiple sequence alignment