Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CVO_RS00195 Genome accession   NZ_CP033720
Coordinates   41659..42696 (+) Length   345 a.a.
NCBI ID   WP_152300151.1    Uniprot ID   A0AAJ4DNK7
Organism   Sulfurimonas sp. CVO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36659..47696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO_RS00170 (CVO_00170) - 36734..37240 (-) 507 WP_159569300.1 hypothetical protein -
  CVO_RS00175 (CVO_00175) - 37446..38657 (+) 1212 WP_159569302.1 NifS family cysteine desulfurase -
  CVO_RS00180 (CVO_00180) - 38687..39661 (+) 975 WP_152300154.1 iron-sulfur cluster assembly scaffold protein -
  CVO_RS00185 (CVO_00185) - 39709..40548 (-) 840 WP_159572056.1 UDP-N-acetylmuramate dehydrogenase -
  CVO_RS00190 (CVO_00190) - 40615..41478 (-) 864 WP_159569304.1 MqnA/MqnD/SBP family protein -
  CVO_RS00195 (CVO_00195) recA 41659..42696 (+) 1038 WP_152300151.1 recombinase RecA Machinery gene
  CVO_RS00200 (CVO_00200) eno 42755..44020 (+) 1266 WP_159569306.1 phosphopyruvate hydratase -
  CVO_RS00205 (CVO_00205) - 44029..44307 (+) 279 WP_152300149.1 bZIP transcription factor -
  CVO_RS00210 (CVO_00210) - 44353..45015 (+) 663 WP_241690976.1 AMIN domain-containing protein -
  CVO_RS00215 (CVO_00215) - 45022..46719 (-) 1698 WP_159569310.1 DUF4105 domain-containing protein -
  CVO_RS00220 (CVO_00220) - 46919..47365 (-) 447 WP_152300146.1 DUF3015 family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37335.08 Da        Isoelectric Point: 4.9657

>NTDB_id=325100 CVO_RS00195 WP_152300151.1 41659..42696(+) (recA) [Sulfurimonas sp. CVO]
MDANKQKSLDLAMKQIDKAFGKGALMRLGDKEIIPIESISTGSLGLDLALGIGGIPQGRVVEIYGPESSGKTTLALQITA
ECQKKGGVCAFVDAEHALDVAYAKNLGVDVDNLLVSQPDYGEQALDIVETIARSGAIDLIVIDSVAALTPKSEIEGEMSD
QNVGVQARLMSKALRKLTGILHKMNCTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGESQIGN
RVKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSYGETKLGQGRENVKAKFIEEPELAREIE
EKIKSAMGISSLMTMDTLEIEETDV

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=325100 CVO_RS00195 WP_152300151.1 41659..42696(+) (recA) [Sulfurimonas sp. CVO]
ATGGACGCAAATAAACAAAAATCATTAGACTTAGCTATGAAACAGATTGATAAAGCATTCGGTAAGGGTGCGCTTATGAG
ACTTGGTGATAAAGAGATAATACCTATAGAGTCGATTAGCACAGGCTCTCTTGGACTTGATCTGGCACTTGGTATAGGCG
GAATTCCACAAGGAAGAGTTGTTGAAATATATGGACCTGAGAGCTCAGGAAAAACAACTTTAGCACTCCAGATAACAGCA
GAGTGTCAAAAAAAGGGCGGAGTTTGTGCCTTTGTTGATGCAGAGCATGCACTTGATGTCGCTTATGCTAAAAATTTAGG
TGTTGATGTTGACAATCTTCTTGTATCTCAGCCGGATTATGGTGAACAAGCTTTAGATATAGTTGAAACTATTGCTCGCA
GCGGCGCAATTGATTTAATAGTTATCGATTCGGTTGCAGCGCTTACTCCTAAGTCTGAGATCGAGGGTGAGATGTCAGAT
CAAAATGTCGGTGTTCAAGCGCGTCTTATGTCAAAAGCACTTCGCAAACTAACGGGTATTTTGCATAAGATGAACTGTAC
AGTTATCTTTATCAATCAAATCCGCATGAAAATCGGCATGATGGGGTATGGTTCTCCAGAGACGACAACAGGCGGAAATG
CGCTTAAGTTTTACGCTTCTGTTCGTATAGATGTGAGGCGTATAGCATCTTTAAAGCAGGGTGAGAGCCAAATAGGCAAC
CGTGTTAAAGCAAAAGTTATAAAAAATAAAGTTGCACCTCCATTTCGTCAGGCTGAGTTTGATATAATGTTTGGAGAAGG
TATTTCAAAAGAGGGTGAGCTTGTTGATTATGGTGTTAAACTGGACATAATTGATAAAAGCGGTGCTTGGTTCTCTTATG
GAGAAACAAAGCTTGGTCAAGGGCGTGAAAATGTTAAAGCTAAGTTTATAGAAGAGCCTGAGCTGGCTCGTGAAATAGAA
GAAAAAATAAAATCAGCCATGGGCATAAGCAGTCTTATGACAATGGATACACTTGAGATAGAAGAAACTGATGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

78.049

95.072

0.742
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.347

96.812

0.739
  recA Helicobacter pylori strain NCTC11637

77.439

95.072

0.736
  recA Neisseria gonorrhoeae MS11

63.478

100

0.635
  recA Neisseria gonorrhoeae MS11

63.478

100

0.635
  recA Neisseria gonorrhoeae strain FA1090

63.478

100

0.635
  recA Ralstonia pseudosolanacearum GMI1000

63.526

95.362

0.606
  recA Pseudomonas stutzeri DSM 10701

61.834

97.971

0.606
  recA Acinetobacter baylyi ADP1

63.609

94.783

0.603
  recA Acinetobacter baumannii D1279779

63.303

94.783

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

95.942

0.591
  recA Glaesserella parasuis strain SC1401

61.61

93.623

0.577
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.55

94.783

0.574
  recA Vibrio cholerae strain A1552

60.55

94.783

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

59.574

95.362

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

55.394

99.42

0.551
  recA Lactococcus lactis subsp. cremoris KW2

57.402

95.942

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.716

93.913

0.542
  recA Streptococcus pneumoniae D39

53.89

100

0.542
  recA Streptococcus pneumoniae R6

53.89

100

0.542
  recA Streptococcus pneumoniae TIGR4

53.89

100

0.542
  recA Streptococcus pneumoniae Rx1

53.89

100

0.542
  recA Streptococcus pyogenes NZ131

56.402

95.072

0.536
  recA Streptococcus mutans UA159

55.015

95.362

0.525
  recA Streptococcus mitis NCTC 12261

54.381

95.942

0.522
  recA Streptococcus mitis SK321

54.381

95.942

0.522

Multiple sequence alignment