Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DHAF_RS15485 Genome accession   NC_011830
Coordinates   3321685..3322725 (-) Length   346 a.a.
NCBI ID   WP_015944387.1    Uniprot ID   -
Organism   Desulfitobacterium hafniense DCB-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3316685..3327725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DHAF_RS15460 (Dhaf_3101) spoVS 3317324..3317584 (-) 261 WP_011459952.1 stage V sporulation protein SpoVS -
  DHAF_RS15465 (Dhaf_3102) - 3317719..3318498 (-) 780 WP_015944383.1 TIGR00282 family metallophosphoesterase -
  DHAF_RS15470 (Dhaf_3103) - 3318584..3319096 (-) 513 WP_015944384.1 hypothetical protein -
  DHAF_RS15475 (Dhaf_3104) rny 3319286..3320860 (-) 1575 WP_005812942.1 ribonuclease Y -
  DHAF_RS15480 (Dhaf_3105) - 3321189..3321683 (-) 495 WP_015944386.1 regulatory protein RecX -
  DHAF_RS15485 (Dhaf_3106) recA 3321685..3322725 (-) 1041 WP_015944387.1 recombinase RecA Machinery gene
  DHAF_RS15490 (Dhaf_3107) - 3322892..3323710 (-) 819 WP_015944388.1 hypothetical protein -
  DHAF_RS15495 (Dhaf_3108) - 3323746..3324273 (-) 528 WP_015944389.1 hypothetical protein -
  DHAF_RS15500 (Dhaf_3109) - 3324406..3325251 (-) 846 WP_005812933.1 alpha/beta fold hydrolase -
  DHAF_RS26445 (Dhaf_3110) - 3325248..3326225 (-) 978 WP_015944390.1 DUF4180 domain-containing protein -
  DHAF_RS15510 (Dhaf_3111) - 3326416..3326811 (-) 396 WP_041271973.1 hypothetical protein -
  DHAF_RS15515 (Dhaf_3112) - 3326998..3327624 (-) 627 WP_015944392.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36968.47 Da        Isoelectric Point: 5.1746

>NTDB_id=32498 DHAF_RS15485 WP_015944387.1 3321685..3322725(-) (recA) [Desulfitobacterium hafniense DCB-2]
MAGNDKLKALDMALSQIEKQFGKGSIMRLGEASAKMAVEVIPTGCLAIDIALGVGGVPRGRVIEIYGPESSGKTTVALHI
AAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEICEALVRSGAIDVIIIDSVAALVPRAEIEGEM
GDSHVGLHARLMSQALRKLTGAISKSNTCVIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRADTLKQGQDMIG
NRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGSMVDVGAELDIINKSGAWYSYKGERLGQGRENVKEFLKKNPEIAAEI
EQGIRASIANVSAPVADDVQEEPEDI

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=32498 DHAF_RS15485 WP_015944387.1 3321685..3322725(-) (recA) [Desulfitobacterium hafniense DCB-2]
ATGGCCGGTAACGATAAATTAAAAGCCCTGGATATGGCTTTAAGTCAGATTGAAAAGCAATTTGGAAAAGGGTCGATTAT
GAGATTGGGGGAGGCTTCTGCCAAAATGGCGGTGGAAGTGATTCCGACGGGCTGTCTGGCCATTGATATAGCCCTTGGGG
TGGGTGGAGTGCCCAGGGGGCGTGTTATAGAAATCTATGGACCTGAGTCTTCCGGTAAGACCACCGTTGCATTGCATATT
GCGGCAGAAGCCCAGAAGCTGGGCGGCGTTGCTGCTTTTATCGATGCGGAGCATGCTCTTGACCCGGTCTATGCCAAGGC
CTTAGGGGTCAACATCGACAATCTTCTGGTATCCCAGCCGGATACAGGGGAGCAGGCTCTGGAGATTTGCGAAGCTTTAG
TGCGCAGTGGGGCTATCGACGTCATTATCATTGACTCTGTGGCAGCTCTTGTTCCCCGGGCAGAGATTGAAGGAGAAATG
GGAGATTCCCATGTGGGTTTACATGCCCGCTTAATGTCTCAAGCCTTGAGAAAATTGACCGGTGCCATCAGTAAGAGCAA
TACCTGCGTTATCTTTATCAACCAAATTCGGGAAAAAGTGGGAATTATGTTTGGTAATCCAGAGACCACAACCGGCGGAC
GGGCTTTGAAGTTCTATGCCTCCGTCCGTTTGGAAGTACGCCGTGCGGATACCCTGAAGCAAGGTCAGGATATGATTGGC
AACCGTACCAAAGTCAAGGTTGTTAAGAATAAGGTGGCTCCGCCCTTTAAACAAGCCGAATTTGACATTATGTACGGAGA
AGGTATTTCCCGTGAAGGCAGCATGGTGGATGTGGGTGCGGAGTTGGATATCATTAATAAGTCCGGGGCTTGGTACTCTT
ATAAAGGTGAGCGCTTAGGTCAGGGAAGAGAGAATGTCAAGGAGTTTCTGAAGAAGAATCCTGAGATTGCCGCCGAAATC
GAACAAGGGATCCGGGCCAGCATTGCTAACGTAAGCGCTCCGGTTGCAGATGATGTCCAAGAGGAGCCGGAAGACATCTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

73.913

93.064

0.688
  recA Latilactobacillus sakei subsp. sakei 23K

66.474

100

0.665
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.098

94.22

0.642
  recA Neisseria gonorrhoeae MS11

64.516

98.555

0.636
  recA Neisseria gonorrhoeae strain FA1090

64.516

98.555

0.636
  recA Neisseria gonorrhoeae MS11

64.516

98.555

0.636
  recA Streptococcus pneumoniae R6

62.393

100

0.633
  recA Streptococcus pneumoniae TIGR4

62.393

100

0.633
  recA Streptococcus pneumoniae D39

62.393

100

0.633
  recA Streptococcus pneumoniae Rx1

62.393

100

0.633
  recA Pseudomonas stutzeri DSM 10701

63.45

98.844

0.627
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.081

99.422

0.627
  recA Vibrio cholerae strain A1552

63.081

99.422

0.627
  recA Helicobacter pylori 26695

62.974

99.133

0.624
  recA Helicobacter pylori strain NCTC11637

62.974

99.133

0.624
  recA Streptococcus mitis NCTC 12261

66.055

94.509

0.624
  recA Streptococcus mitis SK321

66.055

94.509

0.624
  recA Ralstonia pseudosolanacearum GMI1000

65.35

95.087

0.621
  recA Acinetobacter baylyi ADP1

62.5

99.422

0.621
  recA Streptococcus mutans UA159

65.749

94.509

0.621
  recA Acinetobacter baumannii D1279779

62.941

98.266

0.618
  recA Streptococcus pyogenes NZ131

65.443

94.509

0.618
  recA Glaesserella parasuis strain SC1401

65.231

93.931

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.333

95.376

0.604
  recA Lactococcus lactis subsp. cremoris KW2

63.222

95.087

0.601
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.19

94.22

0.595

Multiple sequence alignment