Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JL719_RS07520 Genome accession   NZ_CP033381
Coordinates   1672562..1673614 (+) Length   350 a.a.
NCBI ID   WP_033157268.1    Uniprot ID   A0A2N0VCX6
Organism   Methylomonas sp. LW13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1667562..1678614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL719_RS07505 (U737_07565) - 1669596..1670069 (-) 474 WP_033157264.1 hypothetical protein -
  JL719_RS07510 (U737_07570) - 1670430..1671152 (+) 723 WP_033157266.1 hypothetical protein -
  JL719_RS07515 (U737_07575) - 1671157..1672473 (+) 1317 WP_308441631.1 cobyrinate a,c-diamide synthase -
  JL719_RS07520 (U737_07580) recA 1672562..1673614 (+) 1053 WP_033157268.1 recombinase RecA Machinery gene
  JL719_RS07525 (U737_07585) - 1673577..1674074 (+) 498 WP_084153322.1 regulatory protein RecX -
  JL719_RS07530 (U737_07590) - 1674112..1674441 (+) 330 WP_033157269.1 hypothetical protein -
  JL719_RS07535 (U737_07595) - 1674482..1674793 (+) 312 WP_033157270.1 nucleotidyltransferase family protein -
  JL719_RS07540 (U737_07600) - 1674783..1675121 (+) 339 WP_033157271.1 DUF86 domain-containing protein -
  JL719_RS07545 (U737_07605) alaS 1675214..1677817 (+) 2604 WP_033157460.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37674.06 Da        Isoelectric Point: 4.9461

>NTDB_id=323464 JL719_RS07520 WP_033157268.1 1672562..1673614(+) (recA) [Methylomonas sp. LW13]
MDENKKKALGAALMQIEKQFGKGSVMRMGDVAASRDIEVVSTGSLSLDIALGVGGLPRGRIIEIYGPESSGKTTLTLQTI
AQMQKLGGTAAFVDAEHALDPIYAQKIGVNIDDLLVSQPDTGEQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGDMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGN
ETRVKVVKNKVAPPFKQADFEILYGEGVSFFGELVDLGVEFGFVQKSGSWYAYNNEKIGQGKDNAKQFLRDNPDKAAELE
KAIREKAFAKLASAPAAVSEDDDAEFVDGD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=323464 JL719_RS07520 WP_033157268.1 1672562..1673614(+) (recA) [Methylomonas sp. LW13]
ATGGACGAAAACAAGAAAAAGGCGCTGGGCGCCGCGTTGATGCAGATCGAAAAACAATTCGGCAAGGGCTCCGTGATGCG
GATGGGCGATGTCGCCGCCAGCCGCGACATTGAAGTCGTATCAACCGGCTCGCTGTCTTTGGATATTGCGCTGGGTGTCG
GCGGTTTGCCGCGCGGCCGGATTATCGAAATCTACGGCCCGGAGTCGTCCGGTAAAACCACCTTGACGCTGCAAACCATC
GCCCAGATGCAAAAGTTGGGCGGCACGGCGGCATTCGTCGACGCCGAACACGCGCTGGATCCAATCTATGCGCAAAAAAT
CGGCGTCAATATCGACGATTTGTTGGTTTCGCAACCGGATACCGGCGAACAAGCCCTGGAAATCACCGATATGCTAGTGC
GCTCCGGCGCGGTCGACATCGTGGTGGTCGACTCGGTGGCCGCTTTAACACCCAAGGCCGAAATCGAAGGCGACATGGGC
GACTCGCACATGGGCTTGCAAGCGCGCTTGATGTCGCAAGCCTTGCGCAAACTGACCGCCAACATCAAACGTTCCAACAC
ATTGGTGATTTTCATCAACCAGTTGCGGATGAAAATTGGGGTGATGTTCGGCAACCCGGAAACCACTACCGGCGGTAATG
CGCTGAAGTTTTATGCCTCGGTGCGTCTGGATATTCGCCGCATCGGCGCGATCAAGAAAGGCGACGAGGTGATCGGCAAC
GAGACTCGCGTCAAAGTGGTTAAAAACAAAGTGGCGCCGCCGTTCAAGCAAGCCGATTTCGAAATCCTCTATGGCGAAGG
CGTGTCATTCTTCGGTGAACTGGTCGACTTGGGCGTGGAATTCGGTTTCGTGCAAAAGTCCGGTTCCTGGTATGCCTACA
ACAACGAGAAAATCGGCCAAGGCAAGGACAACGCCAAGCAGTTTTTACGCGATAACCCGGATAAGGCCGCCGAATTGGAA
AAGGCTATCCGCGAGAAGGCCTTTGCCAAATTAGCCAGCGCGCCGGCTGCAGTCAGTGAAGACGACGACGCCGAGTTTGT
CGACGGCGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N0VCX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

73.099

97.714

0.714
  recA Acinetobacter baylyi ADP1

71.72

98

0.703
  recA Acinetobacter baumannii D1279779

69.741

99.143

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.846

92.857

0.686
  recA Vibrio cholerae strain A1552

73.846

92.857

0.686
  recA Glaesserella parasuis strain SC1401

71.131

96

0.683
  recA Ralstonia pseudosolanacearum GMI1000

75.484

88.571

0.669
  recA Neisseria gonorrhoeae MS11

70.988

92.571

0.657
  recA Neisseria gonorrhoeae MS11

70.988

92.571

0.657
  recA Neisseria gonorrhoeae strain FA1090

70.988

92.571

0.657
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.066

95.429

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.536

99.143

0.62
  recA Bacillus subtilis subsp. subtilis str. 168

67.391

92

0.62
  recA Streptococcus mitis SK321

61.207

99.429

0.609
  recA Streptococcus mitis NCTC 12261

60.92

99.429

0.606
  recA Streptococcus mutans UA159

63.804

93.143

0.594
  recA Streptococcus pyogenes NZ131

63.11

93.714

0.591
  recA Streptococcus pneumoniae D39

63.19

93.143

0.589
  recA Streptococcus pneumoniae Rx1

63.19

93.143

0.589
  recA Streptococcus pneumoniae R6

63.19

93.143

0.589
  recA Streptococcus pneumoniae TIGR4

63.19

93.143

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

63.665

92

0.586
  recA Helicobacter pylori strain NCTC11637

61.963

93.143

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.909

94.286

0.574
  recA Helicobacter pylori 26695

61.656

93.143

0.574
  recA Lactococcus lactis subsp. cremoris KW2

61.111

92.571

0.566

Multiple sequence alignment