Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | EBL91_RS06470 | Genome accession | NZ_CP033216 |
| Coordinates | 1330847..1331893 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain CD21062 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1326057..1376691 | 1330847..1331893 | within | 0 |
Gene organization within MGE regions
Location: 1326057..1376691
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EBL91_RS06455 | mnmH | 1327665..1328723 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| EBL91_RS06460 | rimO | 1328717..1330051 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| EBL91_RS06465 | pgsA | 1330038..1330580 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| EBL91_RS06470 | recA | 1330847..1331893 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| EBL91_RS06475 | rny | 1332069..1333610 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| EBL91_RS06480 | - | 1333920..1336256 (+) | 2337 | WP_003419542.1 | diguanylate cyclase | - |
| EBL91_RS06490 | - | 1337062..1337160 (+) | 99 | Protein_1159 | transposase | - |
| EBL91_RS06495 | tnpB | 1337162..1338280 (+) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| EBL91_RS06505 | - | 1338612..1340393 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| EBL91_RS06510 | lepB | 1340473..1341003 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| EBL91_RS06515 | - | 1341043..1341867 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| EBL91_RS06520 | - | 1342124..1343035 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| EBL91_RS06525 | purB | 1343174..1344619 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| EBL91_RS06530 | - | 1344920..1345372 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| EBL91_RS06535 | - | 1345591..1346787 (-) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| EBL91_RS06540 | galT | 1347172..1348122 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| EBL91_RS06545 | - | 1348243..1348995 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| EBL91_RS06550 | - | 1349087..1349863 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| EBL91_RS06555 | - | 1350178..1352076 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| EBL91_RS06560 | - | 1352204..1353325 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| EBL91_RS06565 | - | 1353524..1353856 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| EBL91_RS06570 | - | 1353843..1354901 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| EBL91_RS06575 | - | 1354894..1355964 (+) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| EBL91_RS06580 | - | 1356066..1356602 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| EBL91_RS06585 | - | 1356722..1357429 (+) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| EBL91_RS06590 | - | 1357431..1358150 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| EBL91_RS06595 | - | 1358152..1358922 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| EBL91_RS06600 | - | 1359056..1360447 (+) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| EBL91_RS06605 | - | 1360523..1361344 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| EBL91_RS06610 | - | 1361595..1362749 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| EBL91_RS06615 | - | 1362932..1363132 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| EBL91_RS06620 | - | 1363553..1363981 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| EBL91_RS06625 | - | 1364124..1364879 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| EBL91_RS06635 | - | 1365580..1366086 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| EBL91_RS06640 | - | 1366168..1366488 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| EBL91_RS06645 | - | 1366657..1366854 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| EBL91_RS06650 | - | 1366958..1367398 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| EBL91_RS06655 | - | 1367647..1368090 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| EBL91_RS06660 | - | 1368095..1369159 (+) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| EBL91_RS06665 | - | 1369173..1369601 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| EBL91_RS06670 | - | 1369715..1370161 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| EBL91_RS19655 | - | 1370188..1370355 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| EBL91_RS06680 | - | 1370355..1372808 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| EBL91_RS06685 | - | 1372808..1373230 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| EBL91_RS06690 | - | 1373512..1375041 (+) | 1530 | WP_003419653.1 | NlpC/P60 family protein | - |
| EBL91_RS06695 | - | 1375057..1375383 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| EBL91_RS06700 | - | 1375383..1375811 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=322678 EBL91_RS06470 WP_003419530.1 1330847..1331893(+) (recA) [Clostridioides difficile strain CD21062]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=322678 EBL91_RS06470 WP_003419530.1 1330847..1331893(+) (recA) [Clostridioides difficile strain CD21062]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.