Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | EBL90_RS07130 | Genome accession | NZ_CP033214 |
| Coordinates | 1435362..1436408 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain 12038 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1430572..1481206 | 1435362..1436408 | within | 0 |
Gene organization within MGE regions
Location: 1430572..1481206
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EBL90_RS07115 | mnmH | 1432180..1433238 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| EBL90_RS07120 | rimO | 1433232..1434566 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| EBL90_RS07125 | pgsA | 1434553..1435095 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| EBL90_RS07130 | recA | 1435362..1436408 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| EBL90_RS07135 | rny | 1436584..1438125 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| EBL90_RS07140 | - | 1438435..1440771 (+) | 2337 | WP_077744860.1 | diguanylate cyclase | - |
| EBL90_RS07150 | - | 1441577..1441675 (+) | 99 | Protein_1264 | transposase | - |
| EBL90_RS07155 | tnpB | 1441677..1442795 (+) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| EBL90_RS07165 | - | 1443127..1444908 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| EBL90_RS07170 | lepB | 1444988..1445518 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| EBL90_RS07175 | - | 1445558..1446382 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| EBL90_RS07180 | - | 1446639..1447550 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| EBL90_RS07185 | purB | 1447689..1449134 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| EBL90_RS07190 | - | 1449435..1449887 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| EBL90_RS07195 | - | 1450106..1451302 (-) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| EBL90_RS07200 | galT | 1451687..1452637 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| EBL90_RS07205 | - | 1452758..1453510 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| EBL90_RS07210 | - | 1453602..1454378 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| EBL90_RS07215 | - | 1454693..1456591 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| EBL90_RS07220 | - | 1456719..1457840 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| EBL90_RS07225 | - | 1458039..1458371 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| EBL90_RS07230 | - | 1458358..1459416 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| EBL90_RS07235 | - | 1459409..1460479 (+) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| EBL90_RS07240 | - | 1460581..1461117 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| EBL90_RS07245 | - | 1461237..1461944 (+) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| EBL90_RS07250 | - | 1461946..1462665 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| EBL90_RS07255 | - | 1462667..1463437 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| EBL90_RS07260 | - | 1463571..1464962 (+) | 1392 | WP_107602870.1 | sensor histidine kinase | - |
| EBL90_RS07265 | - | 1465038..1465859 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| EBL90_RS07270 | - | 1466110..1467264 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| EBL90_RS07275 | - | 1467447..1467647 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| EBL90_RS07280 | - | 1468068..1468496 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| EBL90_RS07285 | - | 1468639..1469394 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| EBL90_RS07295 | - | 1470095..1470601 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| EBL90_RS07300 | - | 1470683..1471003 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| EBL90_RS07305 | - | 1471172..1471369 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| EBL90_RS07310 | - | 1471473..1471913 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| EBL90_RS07315 | - | 1472162..1472605 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| EBL90_RS07320 | - | 1472610..1473674 (+) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| EBL90_RS07325 | - | 1473688..1474116 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| EBL90_RS07330 | - | 1474230..1474676 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| EBL90_RS07340 | - | 1474870..1477323 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| EBL90_RS07345 | - | 1477323..1477745 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| EBL90_RS07350 | - | 1478027..1479556 (+) | 1530 | WP_003419653.1 | NlpC/P60 family protein | - |
| EBL90_RS07355 | - | 1479572..1479898 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| EBL90_RS07360 | - | 1479898..1480326 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=322662 EBL90_RS07130 WP_003419530.1 1435362..1436408(+) (recA) [Clostridioides difficile strain 12038]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=322662 EBL90_RS07130 WP_003419530.1 1435362..1436408(+) (recA) [Clostridioides difficile strain 12038]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.