Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | EBB60_RS06985 | Genome accession | NZ_CP033213 |
| Coordinates | 1417966..1419012 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain CD10010 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1413176..1463810 | 1417966..1419012 | within | 0 |
Gene organization within MGE regions
Location: 1413176..1463810
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EBB60_RS06970 | mnmH | 1414784..1415842 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| EBB60_RS06975 | rimO | 1415836..1417170 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| EBB60_RS06980 | pgsA | 1417157..1417699 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| EBB60_RS06985 | recA | 1417966..1419012 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| EBB60_RS06990 | rny | 1419188..1420729 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| EBB60_RS06995 | - | 1421039..1423375 (+) | 2337 | WP_077744860.1 | diguanylate cyclase | - |
| EBB60_RS07005 | - | 1424181..1424279 (+) | 99 | Protein_1264 | transposase | - |
| EBB60_RS07010 | tnpB | 1424281..1425399 (+) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| EBB60_RS07020 | - | 1425731..1427512 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| EBB60_RS07025 | lepB | 1427592..1428122 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| EBB60_RS07030 | - | 1428162..1428986 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| EBB60_RS07035 | - | 1429243..1430154 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| EBB60_RS07040 | purB | 1430293..1431738 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| EBB60_RS07045 | - | 1432039..1432491 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| EBB60_RS07050 | - | 1432710..1433906 (-) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| EBB60_RS07055 | galT | 1434291..1435241 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| EBB60_RS07060 | - | 1435362..1436114 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| EBB60_RS07065 | - | 1436206..1436982 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| EBB60_RS07070 | - | 1437297..1439195 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| EBB60_RS07075 | - | 1439323..1440444 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| EBB60_RS07080 | - | 1440643..1440975 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| EBB60_RS07085 | - | 1440962..1442020 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| EBB60_RS07090 | - | 1442013..1443083 (+) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| EBB60_RS07095 | - | 1443185..1443721 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| EBB60_RS07100 | - | 1443841..1444548 (+) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| EBB60_RS07105 | - | 1444550..1445269 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| EBB60_RS07110 | - | 1445271..1446041 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| EBB60_RS07115 | - | 1446175..1447566 (+) | 1392 | WP_107602870.1 | sensor histidine kinase | - |
| EBB60_RS07120 | - | 1447642..1448463 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| EBB60_RS07125 | - | 1448714..1449868 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| EBB60_RS07130 | - | 1450051..1450251 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| EBB60_RS07135 | - | 1450672..1451100 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| EBB60_RS07140 | - | 1451243..1451998 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| EBB60_RS07150 | - | 1452699..1453205 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| EBB60_RS07155 | - | 1453287..1453607 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| EBB60_RS07160 | - | 1453776..1453973 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| EBB60_RS07165 | - | 1454077..1454517 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| EBB60_RS07170 | - | 1454766..1455209 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| EBB60_RS07175 | - | 1455214..1456278 (+) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| EBB60_RS07180 | - | 1456292..1456720 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| EBB60_RS07185 | - | 1456834..1457280 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| EBB60_RS07195 | - | 1457474..1459927 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| EBB60_RS07200 | - | 1459927..1460349 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| EBB60_RS07205 | - | 1460631..1462160 (+) | 1530 | WP_003419653.1 | NlpC/P60 family protein | - |
| EBB60_RS07210 | - | 1462176..1462502 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| EBB60_RS07215 | - | 1462502..1462930 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=322646 EBB60_RS06985 WP_003419530.1 1417966..1419012(+) (recA) [Clostridioides difficile strain CD10010]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=322646 EBB60_RS06985 WP_003419530.1 1417966..1419012(+) (recA) [Clostridioides difficile strain CD10010]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.